Hb_165666_010

Information

Type -
Description -
Location Contig165666: 7734-8425
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_165666_010 0.0 - - -
2 Hb_004195_250 0.225471494 - - hypothetical protein PRUPE_ppa015658mg [Prunus persica]
3 Hb_000368_080 0.2421665511 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
4 Hb_000866_150 0.2625767923 - - -
5 Hb_001304_100 0.267283692 - - -
6 Hb_003688_080 0.2701581635 - - -
7 Hb_001141_480 0.3159695652 - - -
8 Hb_000483_420 0.3184085373 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
9 Hb_001892_120 0.3286271229 - - PREDICTED: MLP-like protein 328 [Jatropha curcas]
10 Hb_001391_140 0.3328121665 - - PREDICTED: uncharacterized protein LOC101293660 [Fragaria vesca subsp. vesca]
11 Hb_001190_090 0.3336857655 - - PREDICTED: uncharacterized protein LOC105638813 [Jatropha curcas]
12 Hb_003069_020 0.3351903005 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002118_040 0.3428662121 - - PREDICTED: uncharacterized protein LOC104727990 [Camelina sativa]
14 Hb_008014_070 0.3455584369 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_070926_010 0.3494657181 - - PREDICTED: mRNA-decapping enzyme subunit 2-like [Populus euphratica]
16 Hb_103604_010 0.3530734345 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
17 Hb_006586_010 0.3599872688 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_148122_010 0.3625883445 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
19 Hb_001766_100 0.3666645525 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_001268_400 0.3670214051 - - PREDICTED: uncharacterized protein LOC104583970 [Brachypodium distachyon]

Gene co-expression network

sample Hb_165666_010 Hb_165666_010 Hb_004195_250 Hb_004195_250 Hb_165666_010--Hb_004195_250 Hb_000368_080 Hb_000368_080 Hb_165666_010--Hb_000368_080 Hb_000866_150 Hb_000866_150 Hb_165666_010--Hb_000866_150 Hb_001304_100 Hb_001304_100 Hb_165666_010--Hb_001304_100 Hb_003688_080 Hb_003688_080 Hb_165666_010--Hb_003688_080 Hb_001141_480 Hb_001141_480 Hb_165666_010--Hb_001141_480 Hb_004195_250--Hb_000368_080 Hb_148122_010 Hb_148122_010 Hb_004195_250--Hb_148122_010 Hb_006586_010 Hb_006586_010 Hb_004195_250--Hb_006586_010 Hb_000483_420 Hb_000483_420 Hb_004195_250--Hb_000483_420 Hb_004460_010 Hb_004460_010 Hb_004195_250--Hb_004460_010 Hb_000368_080--Hb_006586_010 Hb_000368_080--Hb_003688_080 Hb_148850_010 Hb_148850_010 Hb_000368_080--Hb_148850_010 Hb_001966_010 Hb_001966_010 Hb_000368_080--Hb_001966_010 Hb_070926_010 Hb_070926_010 Hb_000866_150--Hb_070926_010 Hb_128558_010 Hb_128558_010 Hb_000866_150--Hb_128558_010 Hb_000866_150--Hb_000483_420 Hb_003747_130 Hb_003747_130 Hb_000866_150--Hb_003747_130 Hb_004324_350 Hb_004324_350 Hb_000866_150--Hb_004324_350 Hb_143397_010 Hb_143397_010 Hb_001304_100--Hb_143397_010 Hb_001304_100--Hb_003688_080 Hb_001892_120 Hb_001892_120 Hb_001304_100--Hb_001892_120 Hb_010232_010 Hb_010232_010 Hb_001304_100--Hb_010232_010 Hb_001304_100--Hb_070926_010 Hb_003688_080--Hb_001141_480 Hb_000352_180 Hb_000352_180 Hb_003688_080--Hb_000352_180 Hb_000832_230 Hb_000832_230 Hb_003688_080--Hb_000832_230 Hb_000249_120 Hb_000249_120 Hb_003688_080--Hb_000249_120 Hb_000922_090 Hb_000922_090 Hb_001141_480--Hb_000922_090 Hb_163268_010 Hb_163268_010 Hb_001141_480--Hb_163268_010 Hb_001741_130 Hb_001741_130 Hb_001141_480--Hb_001741_130 Hb_000756_020 Hb_000756_020 Hb_001141_480--Hb_000756_020 Hb_008505_020 Hb_008505_020 Hb_001141_480--Hb_008505_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.121705 0 0 0 0.0875358 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.173111 0.272448 0 0

CAGE analysis