Hb_148122_010

Information

Type -
Description -
Location Contig148122: 15836-25933
Sequence    

Annotation

kegg
ID brp:103848430
description DNA-binding protein HEXBP-like
nr
ID XP_012481130.1
description PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NVA1
description E3 ubiquitin-protein ligase RBBP6 OS=Gossypium arboreum GN=F383_23315 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148122_010 0.0 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
2 Hb_009812_020 0.227578895 - - -
3 Hb_163950_010 0.2341347709 - - -
4 Hb_008014_070 0.2708438404 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_001437_240 0.2714435475 - - -
6 Hb_003209_060 0.2715112939 - - -
7 Hb_000003_840 0.2741400051 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
8 Hb_013818_060 0.2775141773 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
9 Hb_000749_250 0.2796409217 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
10 Hb_004195_250 0.2798419882 - - hypothetical protein PRUPE_ppa015658mg [Prunus persica]
11 Hb_143629_090 0.2850173874 - - PREDICTED: uncharacterized protein LOC105647358 [Jatropha curcas]
12 Hb_001799_080 0.2864042024 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
13 Hb_118419_030 0.2904546502 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
14 Hb_000941_070 0.2947090566 - - -
15 Hb_000477_080 0.2954446426 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
16 Hb_004460_010 0.2986387176 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
17 Hb_001268_400 0.3008323793 - - PREDICTED: uncharacterized protein LOC104583970 [Brachypodium distachyon]
18 Hb_000638_020 0.3019408131 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
19 Hb_080477_050 0.3024779298 - - hypothetical protein M569_16374 [Genlisea aurea]
20 Hb_006061_010 0.3027253711 - - PREDICTED: phytosulfokines 4-like [Populus euphratica]

Gene co-expression network

sample Hb_148122_010 Hb_148122_010 Hb_009812_020 Hb_009812_020 Hb_148122_010--Hb_009812_020 Hb_163950_010 Hb_163950_010 Hb_148122_010--Hb_163950_010 Hb_008014_070 Hb_008014_070 Hb_148122_010--Hb_008014_070 Hb_001437_240 Hb_001437_240 Hb_148122_010--Hb_001437_240 Hb_003209_060 Hb_003209_060 Hb_148122_010--Hb_003209_060 Hb_000003_840 Hb_000003_840 Hb_148122_010--Hb_000003_840 Hb_009812_020--Hb_000003_840 Hb_080477_050 Hb_080477_050 Hb_009812_020--Hb_080477_050 Hb_009812_020--Hb_001437_240 Hb_009812_020--Hb_163950_010 Hb_002936_050 Hb_002936_050 Hb_009812_020--Hb_002936_050 Hb_002897_060 Hb_002897_060 Hb_009812_020--Hb_002897_060 Hb_000749_250 Hb_000749_250 Hb_163950_010--Hb_000749_250 Hb_163950_010--Hb_001437_240 Hb_143629_090 Hb_143629_090 Hb_163950_010--Hb_143629_090 Hb_000193_250 Hb_000193_250 Hb_163950_010--Hb_000193_250 Hb_004882_020 Hb_004882_020 Hb_163950_010--Hb_004882_020 Hb_006061_010 Hb_006061_010 Hb_008014_070--Hb_006061_010 Hb_020096_020 Hb_020096_020 Hb_008014_070--Hb_020096_020 Hb_001799_080 Hb_001799_080 Hb_008014_070--Hb_001799_080 Hb_000120_120 Hb_000120_120 Hb_008014_070--Hb_000120_120 Hb_008014_070--Hb_163950_010 Hb_002890_250 Hb_002890_250 Hb_008014_070--Hb_002890_250 Hb_001437_240--Hb_004882_020 Hb_183612_100 Hb_183612_100 Hb_001437_240--Hb_183612_100 Hb_001437_240--Hb_143629_090 Hb_002307_090 Hb_002307_090 Hb_001437_240--Hb_002307_090 Hb_001437_240--Hb_002936_050 Hb_004800_160 Hb_004800_160 Hb_001437_240--Hb_004800_160 Hb_003159_090 Hb_003159_090 Hb_003209_060--Hb_003159_090 Hb_014497_110 Hb_014497_110 Hb_003209_060--Hb_014497_110 Hb_000380_020 Hb_000380_020 Hb_003209_060--Hb_000380_020 Hb_009974_030 Hb_009974_030 Hb_003209_060--Hb_009974_030 Hb_012366_020 Hb_012366_020 Hb_003209_060--Hb_012366_020 Hb_003906_100 Hb_003906_100 Hb_003209_060--Hb_003906_100 Hb_000003_840--Hb_002936_050 Hb_042729_010 Hb_042729_010 Hb_000003_840--Hb_042729_010 Hb_002685_090 Hb_002685_090 Hb_000003_840--Hb_002685_090 Hb_000003_840--Hb_143629_090 Hb_000003_840--Hb_080477_050 Hb_012725_110 Hb_012725_110 Hb_000003_840--Hb_012725_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0486103 0.0244297 0 0 0.0455732 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0557443 0.0438394 0.160535 0 0

CAGE analysis