Hb_002890_250

Information

Type -
Description -
Location Contig2890: 327861-328625
Sequence    

Annotation

kegg
ID cit:102611387
description uncharacterized LOC102611387
nr
ID XP_006477954.1
description PREDICTED: uncharacterized protein LOC102611387 isoform X2 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016746
description 3 -n-debenzoyl-2 -deoxytaxol n-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002890_250 0.0 - - PREDICTED: uncharacterized protein LOC102611387 isoform X2 [Citrus sinensis]
2 Hb_000988_040 0.2295869761 - - -
3 Hb_001198_050 0.2460817197 - - hypothetical protein POPTR_0004s22990g [Populus trichocarpa]
4 Hb_000638_020 0.2536459314 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
5 Hb_008014_070 0.258974027 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000684_370 0.2660336477 - - -
7 Hb_004907_130 0.2692751681 - - -
8 Hb_098315_030 0.2757872224 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
9 Hb_008643_110 0.2781800154 - - BnaCnng39750D [Brassica napus]
10 Hb_000340_340 0.2877165219 - - hypothetical protein POPTR_0014s13260g [Populus trichocarpa]
11 Hb_163950_010 0.294480245 - - -
12 Hb_004157_120 0.2987697324 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
13 Hb_014549_020 0.300693103 - - hypothetical protein POPTR_0013s12350g [Populus trichocarpa]
14 Hb_002073_140 0.3038440901 - - -
15 Hb_118419_030 0.3052868018 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2-like [Jatropha curcas]
16 Hb_000809_050 0.3079600015 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639663 isoform X2 [Jatropha curcas]
17 Hb_004195_100 0.3079678287 - - PREDICTED: uncharacterized protein LOC104106427 [Nicotiana tomentosiformis]
18 Hb_019153_040 0.3091879805 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
19 Hb_001798_010 0.3104434756 transcription factor TF Family: NAC NAC domain containing protein 2-like protein, partial [Helianthus annuus]
20 Hb_065378_010 0.3146867827 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_002890_250 Hb_002890_250 Hb_000988_040 Hb_000988_040 Hb_002890_250--Hb_000988_040 Hb_001198_050 Hb_001198_050 Hb_002890_250--Hb_001198_050 Hb_000638_020 Hb_000638_020 Hb_002890_250--Hb_000638_020 Hb_008014_070 Hb_008014_070 Hb_002890_250--Hb_008014_070 Hb_000684_370 Hb_000684_370 Hb_002890_250--Hb_000684_370 Hb_004907_130 Hb_004907_130 Hb_002890_250--Hb_004907_130 Hb_001798_010 Hb_001798_010 Hb_000988_040--Hb_001798_010 Hb_001364_040 Hb_001364_040 Hb_000988_040--Hb_001364_040 Hb_007576_030 Hb_007576_030 Hb_000988_040--Hb_007576_030 Hb_000988_040--Hb_000638_020 Hb_004942_010 Hb_004942_010 Hb_000988_040--Hb_004942_010 Hb_000300_330 Hb_000300_330 Hb_001198_050--Hb_000300_330 Hb_001198_050--Hb_000684_370 Hb_118419_030 Hb_118419_030 Hb_001198_050--Hb_118419_030 Hb_000733_020 Hb_000733_020 Hb_001198_050--Hb_000733_020 Hb_019153_040 Hb_019153_040 Hb_001198_050--Hb_019153_040 Hb_000193_240 Hb_000193_240 Hb_000638_020--Hb_000193_240 Hb_000380_020 Hb_000380_020 Hb_000638_020--Hb_000380_020 Hb_015974_010 Hb_015974_010 Hb_000638_020--Hb_015974_010 Hb_004453_140 Hb_004453_140 Hb_000638_020--Hb_004453_140 Hb_163950_010 Hb_163950_010 Hb_000638_020--Hb_163950_010 Hb_000832_230 Hb_000832_230 Hb_000638_020--Hb_000832_230 Hb_006061_010 Hb_006061_010 Hb_008014_070--Hb_006061_010 Hb_020096_020 Hb_020096_020 Hb_008014_070--Hb_020096_020 Hb_001799_080 Hb_001799_080 Hb_008014_070--Hb_001799_080 Hb_000120_120 Hb_000120_120 Hb_008014_070--Hb_000120_120 Hb_008014_070--Hb_163950_010 Hb_000014_100 Hb_000014_100 Hb_000684_370--Hb_000014_100 Hb_005657_010 Hb_005657_010 Hb_000684_370--Hb_005657_010 Hb_001767_010 Hb_001767_010 Hb_000684_370--Hb_001767_010 Hb_143629_050 Hb_143629_050 Hb_000684_370--Hb_143629_050 Hb_000684_370--Hb_019153_040 Hb_004800_160 Hb_004800_160 Hb_000684_370--Hb_004800_160 Hb_007245_090 Hb_007245_090 Hb_004907_130--Hb_007245_090 Hb_000934_030 Hb_000934_030 Hb_004907_130--Hb_000934_030 Hb_000809_050 Hb_000809_050 Hb_004907_130--Hb_000809_050 Hb_004907_130--Hb_000014_100 Hb_001349_010 Hb_001349_010 Hb_004907_130--Hb_001349_010 Hb_004650_070 Hb_004650_070 Hb_004907_130--Hb_004650_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105516 0 0 0 0.49212 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.383798 0.150729 0.485406 0.193035 0

CAGE analysis