Hb_020096_020

Information

Type -
Description -
Location Contig20096: 17923-19664
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020096_020 0.0 - - -
2 Hb_007590_060 0.221029216 - - -
3 Hb_008014_070 0.2322701464 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_001799_080 0.2361187009 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
5 Hb_159679_010 0.23775536 - - PREDICTED: uncharacterized protein LOC105786838 [Gossypium raimondii]
6 Hb_001638_210 0.2467838886 - - conserved hypothetical protein [Ricinus communis]
7 Hb_027892_010 0.2469345783 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
8 Hb_000249_090 0.2495583718 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
9 Hb_154443_010 0.250685891 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
10 Hb_006061_010 0.2511201704 - - PREDICTED: phytosulfokines 4-like [Populus euphratica]
11 Hb_004705_030 0.2514274657 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000120_120 0.2620290456 - - PREDICTED: phosphoinositide phospholipase C 2 [Jatropha curcas]
13 Hb_033152_050 0.2672076432 - - hypothetical protein JCGZ_04890 [Jatropha curcas]
14 Hb_006018_030 0.2787089953 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
15 Hb_000120_650 0.2824796072 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
16 Hb_013818_060 0.2828503888 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
17 Hb_000699_120 0.2850965935 - - DNA-binding family protein [Populus trichocarpa]
18 Hb_003599_070 0.2906680285 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000972_010 0.291607367 - - PREDICTED: kinesin KP1 [Jatropha curcas]
20 Hb_105712_010 0.2916970739 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]

Gene co-expression network

sample Hb_020096_020 Hb_020096_020 Hb_007590_060 Hb_007590_060 Hb_020096_020--Hb_007590_060 Hb_008014_070 Hb_008014_070 Hb_020096_020--Hb_008014_070 Hb_001799_080 Hb_001799_080 Hb_020096_020--Hb_001799_080 Hb_159679_010 Hb_159679_010 Hb_020096_020--Hb_159679_010 Hb_001638_210 Hb_001638_210 Hb_020096_020--Hb_001638_210 Hb_027892_010 Hb_027892_010 Hb_020096_020--Hb_027892_010 Hb_033152_050 Hb_033152_050 Hb_007590_060--Hb_033152_050 Hb_007590_060--Hb_001638_210 Hb_000477_080 Hb_000477_080 Hb_007590_060--Hb_000477_080 Hb_006018_030 Hb_006018_030 Hb_007590_060--Hb_006018_030 Hb_003913_140 Hb_003913_140 Hb_007590_060--Hb_003913_140 Hb_006061_010 Hb_006061_010 Hb_008014_070--Hb_006061_010 Hb_008014_070--Hb_001799_080 Hb_000120_120 Hb_000120_120 Hb_008014_070--Hb_000120_120 Hb_163950_010 Hb_163950_010 Hb_008014_070--Hb_163950_010 Hb_002890_250 Hb_002890_250 Hb_008014_070--Hb_002890_250 Hb_004460_010 Hb_004460_010 Hb_001799_080--Hb_004460_010 Hb_001799_080--Hb_000120_120 Hb_000637_120 Hb_000637_120 Hb_001799_080--Hb_000637_120 Hb_013818_060 Hb_013818_060 Hb_001799_080--Hb_013818_060 Hb_005438_010 Hb_005438_010 Hb_159679_010--Hb_005438_010 Hb_007336_030 Hb_007336_030 Hb_159679_010--Hb_007336_030 Hb_015322_040 Hb_015322_040 Hb_159679_010--Hb_015322_040 Hb_001534_010 Hb_001534_010 Hb_159679_010--Hb_001534_010 Hb_000098_320 Hb_000098_320 Hb_159679_010--Hb_000098_320 Hb_000249_090 Hb_000249_090 Hb_001638_210--Hb_000249_090 Hb_001638_210--Hb_006018_030 Hb_001741_040 Hb_001741_040 Hb_001638_210--Hb_001741_040 Hb_000120_650 Hb_000120_650 Hb_001638_210--Hb_000120_650 Hb_075449_050 Hb_075449_050 Hb_001638_210--Hb_075449_050 Hb_048937_030 Hb_048937_030 Hb_001638_210--Hb_048937_030 Hb_027892_010--Hb_000249_090 Hb_027892_010--Hb_000120_650 Hb_027892_010--Hb_000120_120 Hb_004705_030 Hb_004705_030 Hb_027892_010--Hb_004705_030 Hb_000249_130 Hb_000249_130 Hb_027892_010--Hb_000249_130 Hb_027892_010--Hb_013818_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.567318 0 0 0 0.0678141 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.50939 0.133368 1.31288 0.168987 0

CAGE analysis