Hb_005438_010

Information

Type -
Description -
Location Contig5438: 40841-42432
Sequence    

Annotation

kegg
ID bvg:104902779
description uncharacterized LOC104902779
nr
ID XP_010688983.1
description PREDICTED: uncharacterized protein LOC104902779 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID M0Z9G4
description Uncharacterized protein OS=Hordeum vulgare var. distichum PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005438_010 0.0 - - PREDICTED: uncharacterized protein LOC104902779 [Beta vulgaris subsp. vulgaris]
2 Hb_159679_010 0.1752789909 - - PREDICTED: uncharacterized protein LOC105786838 [Gossypium raimondii]
3 Hb_012253_010 0.2025034075 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_011640_030 0.2520070181 - - 60S ribosomal protein L34A [Hevea brasiliensis]
5 Hb_000098_320 0.2763834808 - - -
6 Hb_007336_030 0.2806033347 - - -
7 Hb_001534_010 0.2885326137 - - Alpha-expansin 3 precursor [Theobroma cacao]
8 Hb_001243_010 0.2917206822 - - PREDICTED: dirigent protein 4-like [Populus euphratica]
9 Hb_001623_210 0.2962513837 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
10 Hb_015322_040 0.2969611102 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
11 Hb_005616_030 0.309947813 - - PREDICTED: wall-associated receptor kinase-like 1 [Eucalyptus grandis]
12 Hb_105712_010 0.3208486802 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
13 Hb_150751_010 0.3223256729 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
14 Hb_007590_060 0.3281365029 - - -
15 Hb_137133_010 0.3286196009 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
16 Hb_001780_070 0.3311053028 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
17 Hb_006018_030 0.3349105628 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
18 Hb_001638_210 0.3479863444 - - conserved hypothetical protein [Ricinus communis]
19 Hb_020096_020 0.3485722377 - - -
20 Hb_001391_020 0.3501634398 - - Arylacetamide deacetylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_005438_010 Hb_005438_010 Hb_159679_010 Hb_159679_010 Hb_005438_010--Hb_159679_010 Hb_012253_010 Hb_012253_010 Hb_005438_010--Hb_012253_010 Hb_011640_030 Hb_011640_030 Hb_005438_010--Hb_011640_030 Hb_000098_320 Hb_000098_320 Hb_005438_010--Hb_000098_320 Hb_007336_030 Hb_007336_030 Hb_005438_010--Hb_007336_030 Hb_001534_010 Hb_001534_010 Hb_005438_010--Hb_001534_010 Hb_020096_020 Hb_020096_020 Hb_159679_010--Hb_020096_020 Hb_159679_010--Hb_007336_030 Hb_015322_040 Hb_015322_040 Hb_159679_010--Hb_015322_040 Hb_159679_010--Hb_001534_010 Hb_159679_010--Hb_000098_320 Hb_150751_010 Hb_150751_010 Hb_012253_010--Hb_150751_010 Hb_012253_010--Hb_011640_030 Hb_012253_010--Hb_159679_010 Hb_001623_210 Hb_001623_210 Hb_012253_010--Hb_001623_210 Hb_008768_030 Hb_008768_030 Hb_012253_010--Hb_008768_030 Hb_011640_030--Hb_000098_320 Hb_137133_010 Hb_137133_010 Hb_011640_030--Hb_137133_010 Hb_001243_010 Hb_001243_010 Hb_011640_030--Hb_001243_010 Hb_011640_030--Hb_001534_010 Hb_011640_030--Hb_015322_040 Hb_000098_320--Hb_001534_010 Hb_000098_320--Hb_015322_040 Hb_000098_320--Hb_001243_010 Hb_000008_180 Hb_000008_180 Hb_000098_320--Hb_000008_180 Hb_000230_320 Hb_000230_320 Hb_000098_320--Hb_000230_320 Hb_065182_010 Hb_065182_010 Hb_007336_030--Hb_065182_010 Hb_007336_030--Hb_020096_020 Hb_042778_010 Hb_042778_010 Hb_007336_030--Hb_042778_010 Hb_007336_030--Hb_000098_320 Hb_001534_010--Hb_015322_040 Hb_001534_010--Hb_001243_010 Hb_001534_010--Hb_000008_180 Hb_001534_010--Hb_000230_320 Hb_064885_080 Hb_064885_080 Hb_001534_010--Hb_064885_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.124826 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.595671 0 0.34878 0.106082 0

CAGE analysis