Hb_001243_010

Information

Type -
Description -
Location Contig1243: 5506-6057
Sequence    

Annotation

kegg
ID tcc:TCM_006680
description Disease resistance-responsive family protein
nr
ID XP_011037132.1
description PREDICTED: dirigent protein 4-like [Populus euphratica]
swissprot
ID Q9SKQ2
description Dirigent protein 4 OS=Arabidopsis thaliana GN=DIR4 PE=2 SV=1
trembl
ID A0A061DYB6
description Disease resistance-responsive family protein OS=Theobroma cacao GN=TCM_006680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001243_010 0.0 - - PREDICTED: dirigent protein 4-like [Populus euphratica]
2 Hb_015322_040 0.0733855774 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
3 Hb_001534_010 0.0806271948 - - Alpha-expansin 3 precursor [Theobroma cacao]
4 Hb_000098_320 0.1048573793 - - -
5 Hb_000230_320 0.1488795858 - - PREDICTED: AP-5 complex subunit mu-like [Nelumbo nucifera]
6 Hb_000008_180 0.1785565789 - - conserved hypothetical protein [Ricinus communis]
7 Hb_110559_010 0.1815055191 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
8 Hb_001357_070 0.1815483575 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
9 Hb_062562_010 0.1817176151 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
10 Hb_000521_010 0.1821057565 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
11 Hb_144451_010 0.1824001629 - - hypothetical protein VITISV_001808 [Vitis vinifera]
12 Hb_000510_020 0.1824381491 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
13 Hb_002893_160 0.1828458908 - - peptidase, putative [Ricinus communis]
14 Hb_010896_020 0.1828532491 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_137133_010 0.2212862595 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
16 Hb_064885_080 0.2354065889 - - -
17 Hb_011640_030 0.2598473012 - - 60S ribosomal protein L34A [Hevea brasiliensis]
18 Hb_008768_030 0.2613713476 - - -
19 Hb_159679_010 0.2772972926 - - PREDICTED: uncharacterized protein LOC105786838 [Gossypium raimondii]
20 Hb_005438_010 0.2917206822 - - PREDICTED: uncharacterized protein LOC104902779 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_001243_010 Hb_001243_010 Hb_015322_040 Hb_015322_040 Hb_001243_010--Hb_015322_040 Hb_001534_010 Hb_001534_010 Hb_001243_010--Hb_001534_010 Hb_000098_320 Hb_000098_320 Hb_001243_010--Hb_000098_320 Hb_000230_320 Hb_000230_320 Hb_001243_010--Hb_000230_320 Hb_000008_180 Hb_000008_180 Hb_001243_010--Hb_000008_180 Hb_110559_010 Hb_110559_010 Hb_001243_010--Hb_110559_010 Hb_015322_040--Hb_001534_010 Hb_015322_040--Hb_000098_320 Hb_015322_040--Hb_000008_180 Hb_015322_040--Hb_000230_320 Hb_064885_080 Hb_064885_080 Hb_015322_040--Hb_064885_080 Hb_001534_010--Hb_000098_320 Hb_001534_010--Hb_000008_180 Hb_001534_010--Hb_000230_320 Hb_001534_010--Hb_064885_080 Hb_000098_320--Hb_000008_180 Hb_000098_320--Hb_000230_320 Hb_011640_030 Hb_011640_030 Hb_000098_320--Hb_011640_030 Hb_000230_320--Hb_000008_180 Hb_000230_320--Hb_064885_080 Hb_000008_180--Hb_064885_080 Hb_001357_070 Hb_001357_070 Hb_110559_010--Hb_001357_070 Hb_062562_010 Hb_062562_010 Hb_110559_010--Hb_062562_010 Hb_000521_010 Hb_000521_010 Hb_110559_010--Hb_000521_010 Hb_144451_010 Hb_144451_010 Hb_110559_010--Hb_144451_010 Hb_000510_020 Hb_000510_020 Hb_110559_010--Hb_000510_020 Hb_002893_160 Hb_002893_160 Hb_110559_010--Hb_002893_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.229222 0 0.310863 0.0371354 0

CAGE analysis