Hb_002893_160

Information

Type -
Description -
Location Contig2893: 111031-123434
Sequence    

Annotation

kegg
ID rcu:RCOM_0732470
description peptidase, putative (EC:3.4.21.25)
nr
ID XP_002520491.1
description peptidase, putative [Ricinus communis]
swissprot
ID F4K2K3
description ARF guanine-nucleotide exchange factor GNL2 OS=Arabidopsis thaliana GN=GNL2 PE=2 SV=1
trembl
ID B9S3C2
description Peptidase, putative OS=Ricinus communis GN=RCOM_0732470 PE=4 SV=1
Gene Ontology
ID GO:0004252
description arf guanine-nucleotide exchange factor gnl2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002893_160 0.0 - - peptidase, putative [Ricinus communis]
2 Hb_010896_020 6.14988e-05 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_000510_020 0.0037135738 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
4 Hb_144451_010 0.0040969675 - - hypothetical protein VITISV_001808 [Vitis vinifera]
5 Hb_000521_010 0.0073892705 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
6 Hb_062562_010 0.0133633852 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
7 Hb_110559_010 0.0249752484 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
8 Hb_001357_070 0.0272605505 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
9 Hb_137133_010 0.1512082709 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
10 Hb_001243_010 0.1828458908 - - PREDICTED: dirigent protein 4-like [Populus euphratica]
11 Hb_000230_320 0.2335124706 - - PREDICTED: AP-5 complex subunit mu-like [Nelumbo nucifera]
12 Hb_015322_040 0.2406119412 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
13 Hb_001534_010 0.2496077049 - - Alpha-expansin 3 precursor [Theobroma cacao]
14 Hb_000098_320 0.2712455394 - - -
15 Hb_007904_140 0.2726086026 - - -
16 Hb_042778_010 0.2856931623 - - -
17 Hb_000008_180 0.2978426707 - - conserved hypothetical protein [Ricinus communis]
18 Hb_064885_080 0.3081038652 - - -
19 Hb_088538_020 0.3209290642 - - hypothetical protein JCGZ_12178 [Jatropha curcas]
20 Hb_000042_240 0.3280445035 - - -

Gene co-expression network

sample Hb_002893_160 Hb_002893_160 Hb_010896_020 Hb_010896_020 Hb_002893_160--Hb_010896_020 Hb_000510_020 Hb_000510_020 Hb_002893_160--Hb_000510_020 Hb_144451_010 Hb_144451_010 Hb_002893_160--Hb_144451_010 Hb_000521_010 Hb_000521_010 Hb_002893_160--Hb_000521_010 Hb_062562_010 Hb_062562_010 Hb_002893_160--Hb_062562_010 Hb_110559_010 Hb_110559_010 Hb_002893_160--Hb_110559_010 Hb_010896_020--Hb_000510_020 Hb_010896_020--Hb_144451_010 Hb_010896_020--Hb_000521_010 Hb_010896_020--Hb_062562_010 Hb_010896_020--Hb_110559_010 Hb_000510_020--Hb_144451_010 Hb_000510_020--Hb_000521_010 Hb_000510_020--Hb_062562_010 Hb_000510_020--Hb_110559_010 Hb_144451_010--Hb_000521_010 Hb_144451_010--Hb_062562_010 Hb_144451_010--Hb_110559_010 Hb_000521_010--Hb_062562_010 Hb_000521_010--Hb_110559_010 Hb_062562_010--Hb_110559_010 Hb_001357_070 Hb_001357_070 Hb_110559_010--Hb_001357_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.011042 0 0.0166855 0 0

CAGE analysis