Hb_010896_020

Information

Type -
Description -
Location Contig10896: 15996-21477
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID Q99315
description Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-G PE=1 SV=3
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010896_020 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_002893_160 6.14988e-05 - - peptidase, putative [Ricinus communis]
3 Hb_000510_020 0.0037750723 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
4 Hb_144451_010 0.0041584659 - - hypothetical protein VITISV_001808 [Vitis vinifera]
5 Hb_000521_010 0.007450768 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
6 Hb_062562_010 0.0134248799 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
7 Hb_110559_010 0.025036733 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
8 Hb_001357_070 0.0273220324 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
9 Hb_137133_010 0.1512692748 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
10 Hb_001243_010 0.1828532491 - - PREDICTED: dirigent protein 4-like [Populus euphratica]
11 Hb_000230_320 0.233479601 - - PREDICTED: AP-5 complex subunit mu-like [Nelumbo nucifera]
12 Hb_015322_040 0.2406122981 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
13 Hb_001534_010 0.2496118451 - - Alpha-expansin 3 precursor [Theobroma cacao]
14 Hb_000098_320 0.2712554767 - - -
15 Hb_007904_140 0.2726133521 - - -
16 Hb_042778_010 0.2856957901 - - -
17 Hb_000008_180 0.2978182124 - - conserved hypothetical protein [Ricinus communis]
18 Hb_064885_080 0.3080890465 - - -
19 Hb_088538_020 0.3208822168 - - hypothetical protein JCGZ_12178 [Jatropha curcas]
20 Hb_000042_240 0.3280278169 - - -

Gene co-expression network

sample Hb_010896_020 Hb_010896_020 Hb_002893_160 Hb_002893_160 Hb_010896_020--Hb_002893_160 Hb_000510_020 Hb_000510_020 Hb_010896_020--Hb_000510_020 Hb_144451_010 Hb_144451_010 Hb_010896_020--Hb_144451_010 Hb_000521_010 Hb_000521_010 Hb_010896_020--Hb_000521_010 Hb_062562_010 Hb_062562_010 Hb_010896_020--Hb_062562_010 Hb_110559_010 Hb_110559_010 Hb_010896_020--Hb_110559_010 Hb_002893_160--Hb_000510_020 Hb_002893_160--Hb_144451_010 Hb_002893_160--Hb_000521_010 Hb_002893_160--Hb_062562_010 Hb_002893_160--Hb_110559_010 Hb_000510_020--Hb_144451_010 Hb_000510_020--Hb_000521_010 Hb_000510_020--Hb_062562_010 Hb_000510_020--Hb_110559_010 Hb_144451_010--Hb_000521_010 Hb_144451_010--Hb_062562_010 Hb_144451_010--Hb_110559_010 Hb_000521_010--Hb_062562_010 Hb_000521_010--Hb_110559_010 Hb_062562_010--Hb_110559_010 Hb_001357_070 Hb_001357_070 Hb_110559_010--Hb_001357_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0107702 0 0.0162796 0 0

CAGE analysis