Hb_110559_010

Information

Type -
Description -
Location Contig110559: 22-540
Sequence    

Annotation

kegg
ID sly:104646016
description uncharacterized LOC104646016
nr
ID XP_012487705.1
description PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NIH9
description Gag-Pol polyprotein OS=Gossypium arboreum GN=F383_19136 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_110559_010 0.0 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
2 Hb_001357_070 0.002285871 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
3 Hb_062562_010 0.0116132903 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
4 Hb_000521_010 0.0175871769 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
5 Hb_144451_010 0.0208790716 - - hypothetical protein VITISV_001808 [Vitis vinifera]
6 Hb_000510_020 0.0212624046 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
7 Hb_002893_160 0.0249752484 - - peptidase, putative [Ricinus communis]
8 Hb_010896_020 0.025036733 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_137133_010 0.1263999867 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
10 Hb_001243_010 0.1815055191 - - PREDICTED: dirigent protein 4-like [Populus euphratica]
11 Hb_015322_040 0.2416874263 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
12 Hb_000230_320 0.2476781746 - - PREDICTED: AP-5 complex subunit mu-like [Nelumbo nucifera]
13 Hb_001534_010 0.2490995247 - - Alpha-expansin 3 precursor [Theobroma cacao]
14 Hb_000098_320 0.2682608293 - - -
15 Hb_007904_140 0.2717390452 - - -
16 Hb_042778_010 0.2856294452 - - -
17 Hb_000008_180 0.3085236333 - - conserved hypothetical protein [Ricinus communis]
18 Hb_064885_080 0.3149540641 - - -
19 Hb_011640_030 0.3317865307 - - 60S ribosomal protein L34A [Hevea brasiliensis]
20 Hb_000240_060 0.3319313338 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_110559_010 Hb_110559_010 Hb_001357_070 Hb_001357_070 Hb_110559_010--Hb_001357_070 Hb_062562_010 Hb_062562_010 Hb_110559_010--Hb_062562_010 Hb_000521_010 Hb_000521_010 Hb_110559_010--Hb_000521_010 Hb_144451_010 Hb_144451_010 Hb_110559_010--Hb_144451_010 Hb_000510_020 Hb_000510_020 Hb_110559_010--Hb_000510_020 Hb_002893_160 Hb_002893_160 Hb_110559_010--Hb_002893_160 Hb_001357_070--Hb_062562_010 Hb_001357_070--Hb_000521_010 Hb_001357_070--Hb_144451_010 Hb_001357_070--Hb_000510_020 Hb_001357_070--Hb_002893_160 Hb_062562_010--Hb_000521_010 Hb_062562_010--Hb_144451_010 Hb_062562_010--Hb_000510_020 Hb_062562_010--Hb_002893_160 Hb_010896_020 Hb_010896_020 Hb_062562_010--Hb_010896_020 Hb_000521_010--Hb_144451_010 Hb_000521_010--Hb_000510_020 Hb_000521_010--Hb_002893_160 Hb_000521_010--Hb_010896_020 Hb_144451_010--Hb_000510_020 Hb_144451_010--Hb_002893_160 Hb_144451_010--Hb_010896_020 Hb_000510_020--Hb_002893_160 Hb_000510_020--Hb_010896_020 Hb_002893_160--Hb_010896_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.126325 0 0.16939 0 0

CAGE analysis