Hb_000008_180

Information

Type -
Description -
Location Contig8: 239330-243372
Sequence    

Annotation

kegg
ID rcu:RCOM_0034350
description hypothetical protein
nr
ID XP_002529935.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVB6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0034350 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58666: 242787-243417
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000230_320 0.0900870534 - - PREDICTED: AP-5 complex subunit mu-like [Nelumbo nucifera]
3 Hb_015322_040 0.1274942098 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
4 Hb_001534_010 0.1397282743 - - Alpha-expansin 3 precursor [Theobroma cacao]
5 Hb_000098_320 0.1636961156 - - -
6 Hb_001243_010 0.1785565789 - - PREDICTED: dirigent protein 4-like [Populus euphratica]
7 Hb_064885_080 0.225146951 - - -
8 Hb_001114_340 0.2480668607 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
9 Hb_008768_030 0.2805249642 - - -
10 Hb_088538_020 0.2949166852 - - hypothetical protein JCGZ_12178 [Jatropha curcas]
11 Hb_159679_010 0.2959921891 - - PREDICTED: uncharacterized protein LOC105786838 [Gossypium raimondii]
12 Hb_010896_020 0.2978182124 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_002893_160 0.2978426707 - - peptidase, putative [Ricinus communis]
14 Hb_000510_020 0.2993368764 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
15 Hb_144451_010 0.2994930669 - - hypothetical protein VITISV_001808 [Vitis vinifera]
16 Hb_000521_010 0.3008490031 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
17 Hb_062562_010 0.3033756868 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
18 Hb_110559_010 0.3085236333 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
19 Hb_001357_070 0.3095725178 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
20 Hb_001842_130 0.3274145113 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000008_180 Hb_000008_180 Hb_000230_320 Hb_000230_320 Hb_000008_180--Hb_000230_320 Hb_015322_040 Hb_015322_040 Hb_000008_180--Hb_015322_040 Hb_001534_010 Hb_001534_010 Hb_000008_180--Hb_001534_010 Hb_000098_320 Hb_000098_320 Hb_000008_180--Hb_000098_320 Hb_001243_010 Hb_001243_010 Hb_000008_180--Hb_001243_010 Hb_064885_080 Hb_064885_080 Hb_000008_180--Hb_064885_080 Hb_000230_320--Hb_015322_040 Hb_000230_320--Hb_001243_010 Hb_000230_320--Hb_001534_010 Hb_000230_320--Hb_000098_320 Hb_000230_320--Hb_064885_080 Hb_015322_040--Hb_001534_010 Hb_015322_040--Hb_000098_320 Hb_015322_040--Hb_001243_010 Hb_015322_040--Hb_064885_080 Hb_001534_010--Hb_000098_320 Hb_001534_010--Hb_001243_010 Hb_001534_010--Hb_064885_080 Hb_000098_320--Hb_001243_010 Hb_011640_030 Hb_011640_030 Hb_000098_320--Hb_011640_030 Hb_110559_010 Hb_110559_010 Hb_001243_010--Hb_110559_010 Hb_001114_340 Hb_001114_340 Hb_064885_080--Hb_001114_340 Hb_010174_070 Hb_010174_070 Hb_064885_080--Hb_010174_070 Hb_001842_130 Hb_001842_130 Hb_064885_080--Hb_001842_130 Hb_179520_010 Hb_179520_010 Hb_064885_080--Hb_179520_010 Hb_000995_070 Hb_000995_070 Hb_064885_080--Hb_000995_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0457734 0 0.13322 0.0289027 0

CAGE analysis