Hb_001534_010

Information

Type -
Description -
Location Contig1534: 16380-17872
Sequence    

Annotation

kegg
ID tcc:TCM_022306
description Alpha-expansin 3 precursor
nr
ID XP_007027486.1
description Alpha-expansin 3 precursor [Theobroma cacao]
swissprot
ID Q9FMA0
description Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1
trembl
ID A0A061ETJ7
description Alpha-expansin 3 OS=Theobroma cacao GN=TCM_022306 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001534_010 0.0 - - Alpha-expansin 3 precursor [Theobroma cacao]
2 Hb_015322_040 0.0184490371 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
3 Hb_000098_320 0.0351516991 - - -
4 Hb_001243_010 0.0806271948 - - PREDICTED: dirigent protein 4-like [Populus euphratica]
5 Hb_000008_180 0.1397282743 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000230_320 0.1554070565 - - PREDICTED: AP-5 complex subunit mu-like [Nelumbo nucifera]
7 Hb_064885_080 0.2337153844 - - -
8 Hb_062562_010 0.2490441452 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
9 Hb_110559_010 0.2490995247 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
10 Hb_001357_070 0.2491701598 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
11 Hb_000521_010 0.2492132631 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
12 Hb_144451_010 0.2493637427 - - hypothetical protein VITISV_001808 [Vitis vinifera]
13 Hb_000510_020 0.2493839079 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
14 Hb_002893_160 0.2496077049 - - peptidase, putative [Ricinus communis]
15 Hb_010896_020 0.2496118451 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_008768_030 0.2518943119 - - -
17 Hb_011640_030 0.2638065745 - - 60S ribosomal protein L34A [Hevea brasiliensis]
18 Hb_159679_010 0.2679329783 - - PREDICTED: uncharacterized protein LOC105786838 [Gossypium raimondii]
19 Hb_137133_010 0.2805089134 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
20 Hb_005438_010 0.2885326137 - - PREDICTED: uncharacterized protein LOC104902779 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_001534_010 Hb_001534_010 Hb_015322_040 Hb_015322_040 Hb_001534_010--Hb_015322_040 Hb_000098_320 Hb_000098_320 Hb_001534_010--Hb_000098_320 Hb_001243_010 Hb_001243_010 Hb_001534_010--Hb_001243_010 Hb_000008_180 Hb_000008_180 Hb_001534_010--Hb_000008_180 Hb_000230_320 Hb_000230_320 Hb_001534_010--Hb_000230_320 Hb_064885_080 Hb_064885_080 Hb_001534_010--Hb_064885_080 Hb_015322_040--Hb_000098_320 Hb_015322_040--Hb_001243_010 Hb_015322_040--Hb_000008_180 Hb_015322_040--Hb_000230_320 Hb_015322_040--Hb_064885_080 Hb_000098_320--Hb_001243_010 Hb_000098_320--Hb_000008_180 Hb_000098_320--Hb_000230_320 Hb_011640_030 Hb_011640_030 Hb_000098_320--Hb_011640_030 Hb_001243_010--Hb_000230_320 Hb_001243_010--Hb_000008_180 Hb_110559_010 Hb_110559_010 Hb_001243_010--Hb_110559_010 Hb_000008_180--Hb_000230_320 Hb_000008_180--Hb_064885_080 Hb_000230_320--Hb_064885_080 Hb_001114_340 Hb_001114_340 Hb_064885_080--Hb_001114_340 Hb_010174_070 Hb_010174_070 Hb_064885_080--Hb_010174_070 Hb_001842_130 Hb_001842_130 Hb_064885_080--Hb_001842_130 Hb_179520_010 Hb_179520_010 Hb_064885_080--Hb_179520_010 Hb_000995_070 Hb_000995_070 Hb_064885_080--Hb_000995_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0920698 0 0.127691 0.0295735 0

CAGE analysis