Hb_000098_320

Information

Type -
Description -
Location Contig98: 300617-300971
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000098_320 0.0 - - -
2 Hb_001534_010 0.0351516991 - - Alpha-expansin 3 precursor [Theobroma cacao]
3 Hb_015322_040 0.053514157 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
4 Hb_001243_010 0.1048573793 - - PREDICTED: dirigent protein 4-like [Populus euphratica]
5 Hb_000008_180 0.1636961156 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000230_320 0.1890443725 - - PREDICTED: AP-5 complex subunit mu-like [Nelumbo nucifera]
7 Hb_011640_030 0.2417813479 - - 60S ribosomal protein L34A [Hevea brasiliensis]
8 Hb_064885_080 0.2498785634 - - -
9 Hb_008768_030 0.2563288692 - - -
10 Hb_001357_070 0.2680937394 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
11 Hb_110559_010 0.2682608293 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
12 Hb_062562_010 0.2693859771 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
13 Hb_000521_010 0.270143231 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
14 Hb_144451_010 0.2706118487 - - hypothetical protein VITISV_001808 [Vitis vinifera]
15 Hb_000510_020 0.2706687776 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
16 Hb_002893_160 0.2712455394 - - peptidase, putative [Ricinus communis]
17 Hb_010896_020 0.2712554767 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_159679_010 0.2716050622 - - PREDICTED: uncharacterized protein LOC105786838 [Gossypium raimondii]
19 Hb_005438_010 0.2763834808 - - PREDICTED: uncharacterized protein LOC104902779 [Beta vulgaris subsp. vulgaris]
20 Hb_137133_010 0.2856131116 - - hypothetical protein JCGZ_09913 [Jatropha curcas]

Gene co-expression network

sample Hb_000098_320 Hb_000098_320 Hb_001534_010 Hb_001534_010 Hb_000098_320--Hb_001534_010 Hb_015322_040 Hb_015322_040 Hb_000098_320--Hb_015322_040 Hb_001243_010 Hb_001243_010 Hb_000098_320--Hb_001243_010 Hb_000008_180 Hb_000008_180 Hb_000098_320--Hb_000008_180 Hb_000230_320 Hb_000230_320 Hb_000098_320--Hb_000230_320 Hb_011640_030 Hb_011640_030 Hb_000098_320--Hb_011640_030 Hb_001534_010--Hb_015322_040 Hb_001534_010--Hb_001243_010 Hb_001534_010--Hb_000008_180 Hb_001534_010--Hb_000230_320 Hb_064885_080 Hb_064885_080 Hb_001534_010--Hb_064885_080 Hb_015322_040--Hb_001243_010 Hb_015322_040--Hb_000008_180 Hb_015322_040--Hb_000230_320 Hb_015322_040--Hb_064885_080 Hb_001243_010--Hb_000230_320 Hb_001243_010--Hb_000008_180 Hb_110559_010 Hb_110559_010 Hb_001243_010--Hb_110559_010 Hb_000008_180--Hb_000230_320 Hb_000008_180--Hb_064885_080 Hb_000230_320--Hb_064885_080 Hb_137133_010 Hb_137133_010 Hb_011640_030--Hb_137133_010 Hb_005438_010 Hb_005438_010 Hb_011640_030--Hb_005438_010 Hb_011640_030--Hb_001243_010 Hb_011640_030--Hb_001534_010 Hb_011640_030--Hb_015322_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.253592 0 0.305925 0.0879658 0

CAGE analysis