Hb_011640_030

Information

Type -
Description -
Location Contig11640: 22483-24970
Sequence    

Annotation

kegg
ID rcu:RCOM_0836350
description 60S ribosomal protein L34, putative
nr
ID ADR71241.1
description 60S ribosomal protein L34A [Hevea brasiliensis]
swissprot
ID P40590
description 60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1
trembl
ID I3NMK4
description 60S ribosomal protein L34A OS=Hevea brasiliensis GN=RPL34A PE=2 SV=1
Gene Ontology
ID GO:0005622
description 60s ribosomal protein l34

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011640_030 0.0 - - 60S ribosomal protein L34A [Hevea brasiliensis]
2 Hb_000098_320 0.2417813479 - - -
3 Hb_137133_010 0.2481366826 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
4 Hb_005438_010 0.2520070181 - - PREDICTED: uncharacterized protein LOC104902779 [Beta vulgaris subsp. vulgaris]
5 Hb_001243_010 0.2598473012 - - PREDICTED: dirigent protein 4-like [Populus euphratica]
6 Hb_001534_010 0.2638065745 - - Alpha-expansin 3 precursor [Theobroma cacao]
7 Hb_015322_040 0.2776068817 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
8 Hb_012253_010 0.2881479641 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
9 Hb_001357_070 0.3300802215 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
10 Hb_110559_010 0.3317865307 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
11 Hb_062562_010 0.3405293202 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
12 Hb_000521_010 0.3450722306 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
13 Hb_144451_010 0.3475880974 - - hypothetical protein VITISV_001808 [Vitis vinifera]
14 Hb_000510_020 0.3478816266 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
15 Hb_009038_010 0.348573 - - latex cystatin [Hevea brasiliensis]
16 Hb_000130_030 0.3499232328 - - PREDICTED: small ubiquitin-related modifier 2-A-like [Eucalyptus grandis]
17 Hb_002893_160 0.3507306116 - - peptidase, putative [Ricinus communis]
18 Hb_010896_020 0.3507778805 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_000317_300 0.3525050443 - - -
20 Hb_053373_010 0.3532228687 - - Rhicadhesin receptor precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_011640_030 Hb_011640_030 Hb_000098_320 Hb_000098_320 Hb_011640_030--Hb_000098_320 Hb_137133_010 Hb_137133_010 Hb_011640_030--Hb_137133_010 Hb_005438_010 Hb_005438_010 Hb_011640_030--Hb_005438_010 Hb_001243_010 Hb_001243_010 Hb_011640_030--Hb_001243_010 Hb_001534_010 Hb_001534_010 Hb_011640_030--Hb_001534_010 Hb_015322_040 Hb_015322_040 Hb_011640_030--Hb_015322_040 Hb_000098_320--Hb_001534_010 Hb_000098_320--Hb_015322_040 Hb_000098_320--Hb_001243_010 Hb_000008_180 Hb_000008_180 Hb_000098_320--Hb_000008_180 Hb_000230_320 Hb_000230_320 Hb_000098_320--Hb_000230_320 Hb_001357_070 Hb_001357_070 Hb_137133_010--Hb_001357_070 Hb_110559_010 Hb_110559_010 Hb_137133_010--Hb_110559_010 Hb_062562_010 Hb_062562_010 Hb_137133_010--Hb_062562_010 Hb_000521_010 Hb_000521_010 Hb_137133_010--Hb_000521_010 Hb_144451_010 Hb_144451_010 Hb_137133_010--Hb_144451_010 Hb_000510_020 Hb_000510_020 Hb_137133_010--Hb_000510_020 Hb_159679_010 Hb_159679_010 Hb_005438_010--Hb_159679_010 Hb_012253_010 Hb_012253_010 Hb_005438_010--Hb_012253_010 Hb_005438_010--Hb_000098_320 Hb_007336_030 Hb_007336_030 Hb_005438_010--Hb_007336_030 Hb_005438_010--Hb_001534_010 Hb_001243_010--Hb_015322_040 Hb_001243_010--Hb_001534_010 Hb_001243_010--Hb_000230_320 Hb_001243_010--Hb_000008_180 Hb_001243_010--Hb_110559_010 Hb_001534_010--Hb_015322_040 Hb_001534_010--Hb_000008_180 Hb_001534_010--Hb_000230_320 Hb_064885_080 Hb_064885_080 Hb_001534_010--Hb_064885_080 Hb_015322_040--Hb_000008_180 Hb_015322_040--Hb_000230_320 Hb_015322_040--Hb_064885_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.28295 0 0.466373 0.157184 0

CAGE analysis