Hb_159679_010

Information

Type -
Description -
Location Contig159679: 224-1603
Sequence    

Annotation

kegg
ID tcc:TCM_033499
description Retrotransposon protein, Ty3-gypsy sub-class, putative
nr
ID XP_012468770.1
description PREDICTED: uncharacterized protein LOC105786838 [Gossypium raimondii]
swissprot
ID P31843
description RNA-directed DNA polymerase homolog OS=Oenothera berteroana PE=4 SV=1
trembl
ID Q7XGQ4
description Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNAa0028C16.7 PE=4 SV=1
Gene Ontology
ID GO:0005739
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_159679_010 0.0 - - PREDICTED: uncharacterized protein LOC105786838 [Gossypium raimondii]
2 Hb_005438_010 0.1752789909 - - PREDICTED: uncharacterized protein LOC104902779 [Beta vulgaris subsp. vulgaris]
3 Hb_020096_020 0.23775536 - - -
4 Hb_007336_030 0.2403070133 - - -
5 Hb_015322_040 0.2676971257 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
6 Hb_001534_010 0.2679329783 - - Alpha-expansin 3 precursor [Theobroma cacao]
7 Hb_000098_320 0.2716050622 - - -
8 Hb_001243_010 0.2772972926 - - PREDICTED: dirigent protein 4-like [Populus euphratica]
9 Hb_001623_210 0.2883648192 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
10 Hb_007590_060 0.2894018668 - - -
11 Hb_012253_010 0.2906717133 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
12 Hb_000008_180 0.2959921891 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000230_320 0.3009573487 - - PREDICTED: AP-5 complex subunit mu-like [Nelumbo nucifera]
14 Hb_105712_010 0.3018421717 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
15 Hb_150751_010 0.3035112836 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
16 Hb_001638_210 0.3081628698 - - conserved hypothetical protein [Ricinus communis]
17 Hb_154443_010 0.3312299989 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
18 Hb_033152_050 0.3413881883 - - hypothetical protein JCGZ_04890 [Jatropha curcas]
19 Hb_028977_020 0.3431631599 - - hypothetical protein JCGZ_21319 [Jatropha curcas]
20 Hb_006018_030 0.3441106036 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_159679_010 Hb_159679_010 Hb_005438_010 Hb_005438_010 Hb_159679_010--Hb_005438_010 Hb_020096_020 Hb_020096_020 Hb_159679_010--Hb_020096_020 Hb_007336_030 Hb_007336_030 Hb_159679_010--Hb_007336_030 Hb_015322_040 Hb_015322_040 Hb_159679_010--Hb_015322_040 Hb_001534_010 Hb_001534_010 Hb_159679_010--Hb_001534_010 Hb_000098_320 Hb_000098_320 Hb_159679_010--Hb_000098_320 Hb_012253_010 Hb_012253_010 Hb_005438_010--Hb_012253_010 Hb_011640_030 Hb_011640_030 Hb_005438_010--Hb_011640_030 Hb_005438_010--Hb_000098_320 Hb_005438_010--Hb_007336_030 Hb_005438_010--Hb_001534_010 Hb_007590_060 Hb_007590_060 Hb_020096_020--Hb_007590_060 Hb_008014_070 Hb_008014_070 Hb_020096_020--Hb_008014_070 Hb_001799_080 Hb_001799_080 Hb_020096_020--Hb_001799_080 Hb_001638_210 Hb_001638_210 Hb_020096_020--Hb_001638_210 Hb_027892_010 Hb_027892_010 Hb_020096_020--Hb_027892_010 Hb_065182_010 Hb_065182_010 Hb_007336_030--Hb_065182_010 Hb_007336_030--Hb_020096_020 Hb_042778_010 Hb_042778_010 Hb_007336_030--Hb_042778_010 Hb_007336_030--Hb_000098_320 Hb_015322_040--Hb_001534_010 Hb_015322_040--Hb_000098_320 Hb_001243_010 Hb_001243_010 Hb_015322_040--Hb_001243_010 Hb_000008_180 Hb_000008_180 Hb_015322_040--Hb_000008_180 Hb_000230_320 Hb_000230_320 Hb_015322_040--Hb_000230_320 Hb_064885_080 Hb_064885_080 Hb_015322_040--Hb_064885_080 Hb_001534_010--Hb_000098_320 Hb_001534_010--Hb_001243_010 Hb_001534_010--Hb_000008_180 Hb_001534_010--Hb_000230_320 Hb_001534_010--Hb_064885_080 Hb_000098_320--Hb_001243_010 Hb_000098_320--Hb_000008_180 Hb_000098_320--Hb_000230_320 Hb_000098_320--Hb_011640_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0172032 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.039278 0 0.0575559 0.012371 0

CAGE analysis