Hb_000230_320

Information

Type -
Description -
Location Contig230: 305969-318653
Sequence    

Annotation

kegg
ID rcu:RCOM_0678700
description hypothetical protein
nr
ID XP_010245430.1
description PREDICTED: AP-5 complex subunit mu-like [Nelumbo nucifera]
swissprot
ID Q8W0Z6
description AP-5 complex subunit mu OS=Arabidopsis thaliana GN=AP5M PE=2 SV=1
trembl
ID A0A059D0U2
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B01191 PE=4 SV=1
Gene Ontology
ID GO:0030131
description ap-5 complex subunit mu

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000230_320 0.0 - - PREDICTED: AP-5 complex subunit mu-like [Nelumbo nucifera]
2 Hb_000008_180 0.0900870534 - - conserved hypothetical protein [Ricinus communis]
3 Hb_015322_040 0.1374140165 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
4 Hb_001243_010 0.1488795858 - - PREDICTED: dirigent protein 4-like [Populus euphratica]
5 Hb_001534_010 0.1554070565 - - Alpha-expansin 3 precursor [Theobroma cacao]
6 Hb_000098_320 0.1890443725 - - -
7 Hb_064885_080 0.2166892471 - - -
8 Hb_010896_020 0.233479601 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_002893_160 0.2335124706 - - peptidase, putative [Ricinus communis]
10 Hb_000510_020 0.2355165655 - - PREDICTED: uncharacterized protein LOC103415345 [Malus domestica]
11 Hb_144451_010 0.235725609 - - hypothetical protein VITISV_001808 [Vitis vinifera]
12 Hb_000521_010 0.237536904 - - PREDICTED: protein UPSTREAM OF FLC [Jatropha curcas]
13 Hb_062562_010 0.2408959278 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
14 Hb_088538_020 0.2451913397 - - hypothetical protein JCGZ_12178 [Jatropha curcas]
15 Hb_001114_340 0.2466149276 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
16 Hb_110559_010 0.2476781746 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
17 Hb_001357_070 0.2490504529 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
18 Hb_008768_030 0.2851295799 - - -
19 Hb_159679_010 0.3009573487 - - PREDICTED: uncharacterized protein LOC105786838 [Gossypium raimondii]
20 Hb_000141_240 0.3173637129 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000230_320 Hb_000230_320 Hb_000008_180 Hb_000008_180 Hb_000230_320--Hb_000008_180 Hb_015322_040 Hb_015322_040 Hb_000230_320--Hb_015322_040 Hb_001243_010 Hb_001243_010 Hb_000230_320--Hb_001243_010 Hb_001534_010 Hb_001534_010 Hb_000230_320--Hb_001534_010 Hb_000098_320 Hb_000098_320 Hb_000230_320--Hb_000098_320 Hb_064885_080 Hb_064885_080 Hb_000230_320--Hb_064885_080 Hb_000008_180--Hb_015322_040 Hb_000008_180--Hb_001534_010 Hb_000008_180--Hb_000098_320 Hb_000008_180--Hb_001243_010 Hb_000008_180--Hb_064885_080 Hb_015322_040--Hb_001534_010 Hb_015322_040--Hb_000098_320 Hb_015322_040--Hb_001243_010 Hb_015322_040--Hb_064885_080 Hb_001243_010--Hb_001534_010 Hb_001243_010--Hb_000098_320 Hb_110559_010 Hb_110559_010 Hb_001243_010--Hb_110559_010 Hb_001534_010--Hb_000098_320 Hb_001534_010--Hb_064885_080 Hb_011640_030 Hb_011640_030 Hb_000098_320--Hb_011640_030 Hb_001114_340 Hb_001114_340 Hb_064885_080--Hb_001114_340 Hb_010174_070 Hb_010174_070 Hb_064885_080--Hb_010174_070 Hb_001842_130 Hb_001842_130 Hb_064885_080--Hb_001842_130 Hb_179520_010 Hb_179520_010 Hb_064885_080--Hb_179520_010 Hb_000995_070 Hb_000995_070 Hb_064885_080--Hb_000995_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0376081 0 0.110415 0.0118378 0

CAGE analysis