Hb_001623_210

Information

Type -
Description -
Location Contig1623: 116244-119899
Sequence    

Annotation

kegg
ID rcu:RCOM_1022390
description Leucine-rich repeat receptor protein kinase EXS precursor, putative (EC:2.7.10.1 1.3.1.74)
nr
ID XP_012077671.1
description PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
swissprot
ID Q9LHP4
description Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1
trembl
ID B9RWM9
description Leucine-rich repeat receptor protein kinase EXS, putative OS=Ricinus communis GN=RCOM_1022390 PE=4 SV=1
Gene Ontology
ID GO:0016021
description receptor-like protein kinase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001623_210 0.0 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
2 Hb_001638_210 0.2689966412 - - conserved hypothetical protein [Ricinus communis]
3 Hb_006018_030 0.2819335428 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
4 Hb_159679_010 0.2883648192 - - PREDICTED: uncharacterized protein LOC105786838 [Gossypium raimondii]
5 Hb_002836_080 0.2907077762 - - -
6 Hb_012253_010 0.2953219356 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
7 Hb_005438_010 0.2962513837 - - PREDICTED: uncharacterized protein LOC104902779 [Beta vulgaris subsp. vulgaris]
8 Hb_001391_020 0.2991228092 - - Arylacetamide deacetylase, putative [Ricinus communis]
9 Hb_002243_080 0.2998062675 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like [Vitis vinifera]
10 Hb_154443_010 0.3033866595 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
11 Hb_075449_050 0.3047546421 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
12 Hb_033152_050 0.3055699455 - - hypothetical protein JCGZ_04890 [Jatropha curcas]
13 Hb_000249_090 0.327023328 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
14 Hb_028977_020 0.3329130022 - - hypothetical protein JCGZ_21319 [Jatropha curcas]
15 Hb_088144_010 0.3333657109 - - cellulose synthase, putative [Ricinus communis]
16 Hb_007590_060 0.3347040547 - - -
17 Hb_048937_030 0.3427318559 - - hypothetical protein RCOM_0231790 [Ricinus communis]
18 Hb_185830_010 0.343881886 - - PREDICTED: pathogenesis-related protein PR-1 [Jatropha curcas]
19 Hb_004934_080 0.3461289509 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
20 Hb_001357_070 0.3465022427 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_001623_210 Hb_001623_210 Hb_001638_210 Hb_001638_210 Hb_001623_210--Hb_001638_210 Hb_006018_030 Hb_006018_030 Hb_001623_210--Hb_006018_030 Hb_159679_010 Hb_159679_010 Hb_001623_210--Hb_159679_010 Hb_002836_080 Hb_002836_080 Hb_001623_210--Hb_002836_080 Hb_012253_010 Hb_012253_010 Hb_001623_210--Hb_012253_010 Hb_005438_010 Hb_005438_010 Hb_001623_210--Hb_005438_010 Hb_000249_090 Hb_000249_090 Hb_001638_210--Hb_000249_090 Hb_001638_210--Hb_006018_030 Hb_001741_040 Hb_001741_040 Hb_001638_210--Hb_001741_040 Hb_000120_650 Hb_000120_650 Hb_001638_210--Hb_000120_650 Hb_075449_050 Hb_075449_050 Hb_001638_210--Hb_075449_050 Hb_048937_030 Hb_048937_030 Hb_001638_210--Hb_048937_030 Hb_006018_030--Hb_075449_050 Hb_006018_030--Hb_048937_030 Hb_000107_070 Hb_000107_070 Hb_006018_030--Hb_000107_070 Hb_001391_020 Hb_001391_020 Hb_006018_030--Hb_001391_020 Hb_001671_060 Hb_001671_060 Hb_006018_030--Hb_001671_060 Hb_159679_010--Hb_005438_010 Hb_020096_020 Hb_020096_020 Hb_159679_010--Hb_020096_020 Hb_007336_030 Hb_007336_030 Hb_159679_010--Hb_007336_030 Hb_015322_040 Hb_015322_040 Hb_159679_010--Hb_015322_040 Hb_001534_010 Hb_001534_010 Hb_159679_010--Hb_001534_010 Hb_000098_320 Hb_000098_320 Hb_159679_010--Hb_000098_320 Hb_033152_050 Hb_033152_050 Hb_002836_080--Hb_033152_050 Hb_002836_080--Hb_006018_030 Hb_002836_080--Hb_001391_020 Hb_003207_110 Hb_003207_110 Hb_002836_080--Hb_003207_110 Hb_002836_080--Hb_048937_030 Hb_000920_150 Hb_000920_150 Hb_002836_080--Hb_000920_150 Hb_012253_010--Hb_005438_010 Hb_150751_010 Hb_150751_010 Hb_012253_010--Hb_150751_010 Hb_011640_030 Hb_011640_030 Hb_012253_010--Hb_011640_030 Hb_012253_010--Hb_159679_010 Hb_008768_030 Hb_008768_030 Hb_012253_010--Hb_008768_030 Hb_005438_010--Hb_011640_030 Hb_005438_010--Hb_000098_320 Hb_005438_010--Hb_007336_030 Hb_005438_010--Hb_001534_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.045584 0 0 0.0117133 0 0.00483206
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.112888 0 0.113535 0 0

CAGE analysis