Hb_000120_650

Information

Type -
Description -
Location Contig120: 519443-520923
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10530g
description POPTRDRAFT_208272; hypothetical protein
nr
ID XP_012065409.1
description PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
swissprot
ID F4ILY9
description Amino acid transporter ANTL1 OS=Arabidopsis thaliana GN=At2g42005 PE=2 SV=1
trembl
ID A0A067L5P5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22403 PE=4 SV=1
Gene Ontology
ID GO:0016021
description proton-coupled amino acid transporter 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06179: 519490-520964
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000120_650 0.0 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
2 Hb_000249_090 0.0881575923 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
3 Hb_027892_010 0.1029421294 transcription factor TF Family: bHLH LMYC1 [Hevea brasiliensis]
4 Hb_017124_020 0.1294755468 - - hypothetical protein PRUPE_ppa015539mg [Prunus persica]
5 Hb_002685_090 0.1371605999 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
6 Hb_013818_060 0.1429778922 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
7 Hb_004871_050 0.1435734557 - - hypothetical protein F383_22684 [Gossypium arboreum]
8 Hb_000270_410 0.1454292966 - - -
9 Hb_000120_120 0.1501297789 - - PREDICTED: phosphoinositide phospholipase C 2 [Jatropha curcas]
10 Hb_000249_130 0.154077779 - - hypothetical protein RCOM_0254640 [Ricinus communis]
11 Hb_000567_250 0.155824227 - - hypothetical protein B456_009G162000 [Gossypium raimondii]
12 Hb_000972_010 0.1580211065 - - PREDICTED: kinesin KP1 [Jatropha curcas]
13 Hb_004048_050 0.1727176069 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
14 Hb_000157_040 0.1748975648 - - PREDICTED: cycloartenol-C-24-methyltransferase [Jatropha curcas]
15 Hb_012725_110 0.1753612596 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
16 Hb_024952_010 0.1785413182 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
17 Hb_012573_030 0.1793766687 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000003_840 0.1800948611 - - multidrug/pheromone exporter protein [Hevea brasiliensis]
19 Hb_171554_080 0.181849357 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
20 Hb_054865_130 0.181996459 - - acyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000120_650 Hb_000120_650 Hb_000249_090 Hb_000249_090 Hb_000120_650--Hb_000249_090 Hb_027892_010 Hb_027892_010 Hb_000120_650--Hb_027892_010 Hb_017124_020 Hb_017124_020 Hb_000120_650--Hb_017124_020 Hb_002685_090 Hb_002685_090 Hb_000120_650--Hb_002685_090 Hb_013818_060 Hb_013818_060 Hb_000120_650--Hb_013818_060 Hb_004871_050 Hb_004871_050 Hb_000120_650--Hb_004871_050 Hb_000249_090--Hb_027892_010 Hb_000249_090--Hb_013818_060 Hb_004705_030 Hb_004705_030 Hb_000249_090--Hb_004705_030 Hb_004048_050 Hb_004048_050 Hb_000249_090--Hb_004048_050 Hb_000249_090--Hb_002685_090 Hb_000120_120 Hb_000120_120 Hb_027892_010--Hb_000120_120 Hb_027892_010--Hb_004705_030 Hb_000249_130 Hb_000249_130 Hb_027892_010--Hb_000249_130 Hb_027892_010--Hb_013818_060 Hb_017124_020--Hb_004871_050 Hb_000972_010 Hb_000972_010 Hb_017124_020--Hb_000972_010 Hb_000567_250 Hb_000567_250 Hb_017124_020--Hb_000567_250 Hb_017124_020--Hb_027892_010 Hb_017124_020--Hb_000249_090 Hb_000270_410 Hb_000270_410 Hb_002685_090--Hb_000270_410 Hb_000041_070 Hb_000041_070 Hb_002685_090--Hb_000041_070 Hb_015934_020 Hb_015934_020 Hb_002685_090--Hb_015934_020 Hb_012725_110 Hb_012725_110 Hb_002685_090--Hb_012725_110 Hb_002387_060 Hb_002387_060 Hb_002685_090--Hb_002387_060 Hb_002936_050 Hb_002936_050 Hb_002685_090--Hb_002936_050 Hb_013818_060--Hb_000120_120 Hb_013818_060--Hb_000249_130 Hb_143629_090 Hb_143629_090 Hb_013818_060--Hb_143629_090 Hb_004871_050--Hb_000972_010 Hb_004871_050--Hb_000249_130 Hb_004871_050--Hb_000120_120 Hb_001268_400 Hb_001268_400 Hb_004871_050--Hb_001268_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.4145 0.26087 0.426949 0.909311 5.89458 17.3725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.8957 18.3918 74.6958 2.88995 1.45248

CAGE analysis