Hb_002836_080

Information

Type -
Description -
Location Contig2836: 94931-95131
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016021
description wat1-related protein at1g25270-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002836_080 0.0 - - -
2 Hb_033152_050 0.1495380247 - - hypothetical protein JCGZ_04890 [Jatropha curcas]
3 Hb_006018_030 0.2406557451 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
4 Hb_001391_020 0.258682209 - - Arylacetamide deacetylase, putative [Ricinus communis]
5 Hb_003207_110 0.2602640208 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
6 Hb_048937_030 0.2626127991 - - hypothetical protein RCOM_0231790 [Ricinus communis]
7 Hb_000920_150 0.26280256 - - annexin [Manihot esculenta]
8 Hb_001504_140 0.2688430731 - - PREDICTED: deSI-like protein At4g17486 [Populus euphratica]
9 Hb_144484_010 0.2739123492 - - calcineurin-like phosphoesterase [Manihot esculenta]
10 Hb_005700_010 0.2755447641 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
11 Hb_014497_120 0.2770421095 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
12 Hb_012022_130 0.2773932116 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
13 Hb_005396_040 0.2859849606 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_002471_070 0.2872058024 - - Tartrate-resistant acid phosphatase type 5 precursor, putative [Ricinus communis]
15 Hb_000752_070 0.2891833462 - - PREDICTED: mavicyanin-like [Jatropha curcas]
16 Hb_023214_010 0.2903665961 - - aberrant lateral root formation 1 family protein [Populus trichocarpa]
17 Hb_001623_210 0.2907077762 - - PREDICTED: receptor-like protein kinase 2 [Jatropha curcas]
18 Hb_002876_030 0.2933043412 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]
19 Hb_024154_020 0.2965633652 - - polyphenol oxidase [Hevea brasiliensis]
20 Hb_075449_050 0.2972594816 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_002836_080 Hb_002836_080 Hb_033152_050 Hb_033152_050 Hb_002836_080--Hb_033152_050 Hb_006018_030 Hb_006018_030 Hb_002836_080--Hb_006018_030 Hb_001391_020 Hb_001391_020 Hb_002836_080--Hb_001391_020 Hb_003207_110 Hb_003207_110 Hb_002836_080--Hb_003207_110 Hb_048937_030 Hb_048937_030 Hb_002836_080--Hb_048937_030 Hb_000920_150 Hb_000920_150 Hb_002836_080--Hb_000920_150 Hb_033152_050--Hb_006018_030 Hb_007590_060 Hb_007590_060 Hb_033152_050--Hb_007590_060 Hb_033152_050--Hb_048937_030 Hb_001504_140 Hb_001504_140 Hb_033152_050--Hb_001504_140 Hb_001638_210 Hb_001638_210 Hb_033152_050--Hb_001638_210 Hb_075449_050 Hb_075449_050 Hb_006018_030--Hb_075449_050 Hb_006018_030--Hb_048937_030 Hb_000107_070 Hb_000107_070 Hb_006018_030--Hb_000107_070 Hb_006018_030--Hb_001391_020 Hb_006018_030--Hb_001638_210 Hb_001671_060 Hb_001671_060 Hb_006018_030--Hb_001671_060 Hb_185830_010 Hb_185830_010 Hb_001391_020--Hb_185830_010 Hb_001391_020--Hb_075449_050 Hb_001391_020--Hb_001671_060 Hb_001780_070 Hb_001780_070 Hb_001391_020--Hb_001780_070 Hb_001391_020--Hb_000107_070 Hb_002471_070 Hb_002471_070 Hb_003207_110--Hb_002471_070 Hb_003207_110--Hb_000920_150 Hb_005396_040 Hb_005396_040 Hb_003207_110--Hb_005396_040 Hb_023214_010 Hb_023214_010 Hb_003207_110--Hb_023214_010 Hb_002876_030 Hb_002876_030 Hb_003207_110--Hb_002876_030 Hb_001035_040 Hb_001035_040 Hb_003207_110--Hb_001035_040 Hb_000742_270 Hb_000742_270 Hb_048937_030--Hb_000742_270 Hb_011671_400 Hb_011671_400 Hb_048937_030--Hb_011671_400 Hb_048937_030--Hb_000107_070 Hb_003020_310 Hb_003020_310 Hb_048937_030--Hb_003020_310 Hb_000175_610 Hb_000175_610 Hb_048937_030--Hb_000175_610 Hb_000920_150--Hb_001035_040 Hb_148121_010 Hb_148121_010 Hb_000920_150--Hb_148121_010 Hb_000920_150--Hb_023214_010 Hb_000920_150--Hb_002471_070 Hb_001741_090 Hb_001741_090 Hb_000920_150--Hb_001741_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.5448 0 1.10346 19.8542 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.2166 9.26565 40.2447 1.60821 1.29304

CAGE analysis