Hb_001504_140

Information

Type -
Description -
Location Contig1504: 137946-139279
Sequence    

Annotation

kegg
ID cit:102606599
description deSI-like protein At4g17486-like
nr
ID XP_011034507.1
description PREDICTED: deSI-like protein At4g17486 [Populus euphratica]
swissprot
ID Q93VG8
description DeSI-like protein At4g17486 OS=Arabidopsis thaliana GN=At4g17486 PE=2 SV=1
trembl
ID B9SMU8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0471010 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12649: 137918-139716
cDNA
(Sanger)
(ID:Location)		 016_J08.ab1: 137918-139118

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001504_140 0.0 - - PREDICTED: deSI-like protein At4g17486 [Populus euphratica]
2 Hb_144484_010 0.1608071842 - - calcineurin-like phosphoesterase [Manihot esculenta]
3 Hb_005671_020 0.2040536795 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
4 Hb_001635_020 0.2049581375 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
5 Hb_002473_110 0.2163304483 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
6 Hb_011472_010 0.2182589142 - - PREDICTED: protein yippee-like [Jatropha curcas]
7 Hb_158092_010 0.2201546577 - - CYP51 [Hevea brasiliensis]
8 Hb_012022_130 0.2229750266 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
9 Hb_033152_050 0.225683813 - - hypothetical protein JCGZ_04890 [Jatropha curcas]
10 Hb_000922_120 0.2261603165 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
11 Hb_001377_420 0.2276337812 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001959_130 0.2292522608 - - transporter, putative [Ricinus communis]
13 Hb_003032_100 0.2301787726 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
14 Hb_001712_040 0.2332320179 - - Calmodulin, putative [Ricinus communis]
15 Hb_000042_220 0.2394366971 - - PREDICTED: uncharacterized protein LOC105632809 [Jatropha curcas]
16 Hb_002843_080 0.2406963078 - - SAUR family protein [Theobroma cacao]
17 Hb_001096_030 0.2487214654 - - uridylate kinase plant, putative [Ricinus communis]
18 Hb_183961_010 0.2511187154 - - PREDICTED: inactive rhomboid protein 1 [Cucumis sativus]
19 Hb_006018_060 0.2512959011 - - Zinc finger SWIM domain-containing protein 7 isoform 1 [Theobroma cacao]
20 Hb_011316_060 0.252664217 - - alpha-l-fucosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001504_140 Hb_001504_140 Hb_144484_010 Hb_144484_010 Hb_001504_140--Hb_144484_010 Hb_005671_020 Hb_005671_020 Hb_001504_140--Hb_005671_020 Hb_001635_020 Hb_001635_020 Hb_001504_140--Hb_001635_020 Hb_002473_110 Hb_002473_110 Hb_001504_140--Hb_002473_110 Hb_011472_010 Hb_011472_010 Hb_001504_140--Hb_011472_010 Hb_158092_010 Hb_158092_010 Hb_001504_140--Hb_158092_010 Hb_012022_130 Hb_012022_130 Hb_144484_010--Hb_012022_130 Hb_144484_010--Hb_001635_020 Hb_001712_040 Hb_001712_040 Hb_144484_010--Hb_001712_040 Hb_000922_120 Hb_000922_120 Hb_144484_010--Hb_000922_120 Hb_000167_030 Hb_000167_030 Hb_144484_010--Hb_000167_030 Hb_003032_100 Hb_003032_100 Hb_005671_020--Hb_003032_100 Hb_001096_030 Hb_001096_030 Hb_005671_020--Hb_001096_030 Hb_000161_150 Hb_000161_150 Hb_005671_020--Hb_000161_150 Hb_000723_190 Hb_000723_190 Hb_005671_020--Hb_000723_190 Hb_000010_410 Hb_000010_410 Hb_005671_020--Hb_000010_410 Hb_001232_140 Hb_001232_140 Hb_005671_020--Hb_001232_140 Hb_000000_470 Hb_000000_470 Hb_001635_020--Hb_000000_470 Hb_005527_040 Hb_005527_040 Hb_001635_020--Hb_005527_040 Hb_000007_040 Hb_000007_040 Hb_001635_020--Hb_000007_040 Hb_005663_120 Hb_005663_120 Hb_001635_020--Hb_005663_120 Hb_007218_150 Hb_007218_150 Hb_001635_020--Hb_007218_150 Hb_004128_110 Hb_004128_110 Hb_002473_110--Hb_004128_110 Hb_002473_110--Hb_000007_040 Hb_002636_080 Hb_002636_080 Hb_002473_110--Hb_002636_080 Hb_006570_070 Hb_006570_070 Hb_002473_110--Hb_006570_070 Hb_004931_100 Hb_004931_100 Hb_002473_110--Hb_004931_100 Hb_000318_100 Hb_000318_100 Hb_002473_110--Hb_000318_100 Hb_012163_020 Hb_012163_020 Hb_011472_010--Hb_012163_020 Hb_000732_210 Hb_000732_210 Hb_011472_010--Hb_000732_210 Hb_007943_190 Hb_007943_190 Hb_011472_010--Hb_007943_190 Hb_001377_420 Hb_001377_420 Hb_011472_010--Hb_001377_420 Hb_011472_010--Hb_000922_120 Hb_003462_120 Hb_003462_120 Hb_158092_010--Hb_003462_120 Hb_158092_010--Hb_001377_420 Hb_001080_280 Hb_001080_280 Hb_158092_010--Hb_001080_280 Hb_001638_230 Hb_001638_230 Hb_158092_010--Hb_001638_230 Hb_000731_260 Hb_000731_260 Hb_158092_010--Hb_000731_260 Hb_148209_010 Hb_148209_010 Hb_158092_010--Hb_148209_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.35295 0.182488 0.160137 3.95912 0.0865647 0.0356071
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.94866 2.60447 6.82566 1.97938 0.533418

CAGE analysis