Hb_001712_040

Information

Type -
Description -
Location Contig1712: 48927-49409
Sequence    

Annotation

kegg
ID rcu:RCOM_1464230
description Calmodulin, putative (EC:1.3.1.74)
nr
ID XP_002514520.1
description Calmodulin, putative [Ricinus communis]
swissprot
ID Q9LI84
description Probable calcium-binding protein CML16 OS=Arabidopsis thaliana GN=CML16 PE=2 SV=2
trembl
ID B9RLA1
description Calmodulin, putative OS=Ricinus communis GN=RCOM_1464230 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001712_040 0.0 - - Calmodulin, putative [Ricinus communis]
2 Hb_144484_010 0.1826919499 - - calcineurin-like phosphoesterase [Manihot esculenta]
3 Hb_012022_130 0.2040800602 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
4 Hb_000922_120 0.2116469385 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
5 Hb_002843_080 0.2182223034 - - SAUR family protein [Theobroma cacao]
6 Hb_002272_280 0.226196733 - - phosphoglycerate mutase, putative [Ricinus communis]
7 Hb_001504_140 0.2332320179 - - PREDICTED: deSI-like protein At4g17486 [Populus euphratica]
8 Hb_000260_210 0.2349221249 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012163_020 0.2403114795 - - PREDICTED: uncharacterized protein LOC105650815 isoform X3 [Jatropha curcas]
10 Hb_002078_480 0.2407667009 - - hypothetical protein CICLE_v10033318mg [Citrus clementina]
11 Hb_000963_140 0.2426791326 - - ubiquitin-protein ligase, putative [Ricinus communis]
12 Hb_000539_030 0.2426868902 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase diphosphomevelonate decarboxylase [Hevea brasiliensis]
13 Hb_001053_150 0.2479422687 - - -
14 Hb_024154_020 0.2503446919 - - polyphenol oxidase [Hevea brasiliensis]
15 Hb_001635_020 0.2509969395 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
16 Hb_001096_110 0.2544585171 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
17 Hb_000477_080 0.2547591666 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
18 Hb_158092_010 0.2549254217 - - CYP51 [Hevea brasiliensis]
19 Hb_001377_420 0.2561987548 - - conserved hypothetical protein [Ricinus communis]
20 Hb_011316_060 0.2564789354 - - alpha-l-fucosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001712_040 Hb_001712_040 Hb_144484_010 Hb_144484_010 Hb_001712_040--Hb_144484_010 Hb_012022_130 Hb_012022_130 Hb_001712_040--Hb_012022_130 Hb_000922_120 Hb_000922_120 Hb_001712_040--Hb_000922_120 Hb_002843_080 Hb_002843_080 Hb_001712_040--Hb_002843_080 Hb_002272_280 Hb_002272_280 Hb_001712_040--Hb_002272_280 Hb_001504_140 Hb_001504_140 Hb_001712_040--Hb_001504_140 Hb_144484_010--Hb_012022_130 Hb_144484_010--Hb_001504_140 Hb_001635_020 Hb_001635_020 Hb_144484_010--Hb_001635_020 Hb_144484_010--Hb_000922_120 Hb_000167_030 Hb_000167_030 Hb_144484_010--Hb_000167_030 Hb_012022_130--Hb_000922_120 Hb_023301_010 Hb_023301_010 Hb_012022_130--Hb_023301_010 Hb_012022_130--Hb_001504_140 Hb_000138_170 Hb_000138_170 Hb_012022_130--Hb_000138_170 Hb_000922_120--Hb_023301_010 Hb_001454_100 Hb_001454_100 Hb_000922_120--Hb_001454_100 Hb_011472_010 Hb_011472_010 Hb_000922_120--Hb_011472_010 Hb_000539_030 Hb_000539_030 Hb_002843_080--Hb_000539_030 Hb_006538_140 Hb_006538_140 Hb_002843_080--Hb_006538_140 Hb_002260_030 Hb_002260_030 Hb_002843_080--Hb_002260_030 Hb_024154_020 Hb_024154_020 Hb_002843_080--Hb_024154_020 Hb_000914_170 Hb_000914_170 Hb_002843_080--Hb_000914_170 Hb_000260_210 Hb_000260_210 Hb_002843_080--Hb_000260_210 Hb_009646_040 Hb_009646_040 Hb_002272_280--Hb_009646_040 Hb_011377_050 Hb_011377_050 Hb_002272_280--Hb_011377_050 Hb_000019_070 Hb_000019_070 Hb_002272_280--Hb_000019_070 Hb_000638_170 Hb_000638_170 Hb_002272_280--Hb_000638_170 Hb_000161_060 Hb_000161_060 Hb_002272_280--Hb_000161_060 Hb_000521_130 Hb_000521_130 Hb_002272_280--Hb_000521_130 Hb_005671_020 Hb_005671_020 Hb_001504_140--Hb_005671_020 Hb_001504_140--Hb_001635_020 Hb_002473_110 Hb_002473_110 Hb_001504_140--Hb_002473_110 Hb_001504_140--Hb_011472_010 Hb_158092_010 Hb_158092_010 Hb_001504_140--Hb_158092_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.48393 0 1.05771 12.1645 1.67031 1.51242
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6509 6.81148 25.1635 0.605518 1.86387

CAGE analysis