Hb_024154_020

Information

Type -
Description -
Location Contig24154: 64039-65814
Sequence    

Annotation

kegg
ID rcu:RCOM_0935110
description Polyphenol oxidase, chloroplast precursor, putative (EC:1.10.3.1)
nr
ID AHF20575.1
description polyphenol oxidase [Hevea brasiliensis]
swissprot
ID P43309
description Polyphenol oxidase, chloroplastic OS=Malus domestica PE=2 SV=1
trembl
ID B9RZ47
description Polyphenol oxidase, chloroplast, putative OS=Ricinus communis GN=RCOM_0935110 PE=4 SV=1
Gene Ontology
ID GO:0004097
description polyphenol oxidase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024154_020 0.0 - - polyphenol oxidase [Hevea brasiliensis]
2 Hb_002843_080 0.2026988685 - - SAUR family protein [Theobroma cacao]
3 Hb_000752_070 0.2443412442 - - PREDICTED: mavicyanin-like [Jatropha curcas]
4 Hb_001712_040 0.2503446919 - - Calmodulin, putative [Ricinus communis]
5 Hb_144484_010 0.2536627243 - - calcineurin-like phosphoesterase [Manihot esculenta]
6 Hb_000922_120 0.255220465 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
7 Hb_001504_140 0.2613418065 - - PREDICTED: deSI-like protein At4g17486 [Populus euphratica]
8 Hb_012022_130 0.2630790053 - - Vacuolar cation/proton exchanger 1a, putative [Ricinus communis]
9 Hb_001930_090 0.2725557315 - - DNA binding protein, putative [Ricinus communis]
10 Hb_002572_030 0.2868701314 - - PREDICTED: diacylglycerol kinase theta [Jatropha curcas]
11 Hb_002228_060 0.2922187487 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
12 Hb_104000_010 0.2926160962 - - -
13 Hb_002836_080 0.2965633652 - - -
14 Hb_173281_010 0.3016614983 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
15 Hb_000676_340 0.3030716308 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_003144_050 0.3040761524 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
17 Hb_025964_050 0.3070323565 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
18 Hb_001959_130 0.3104457384 - - transporter, putative [Ricinus communis]
19 Hb_000539_030 0.3143894703 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase diphosphomevelonate decarboxylase [Hevea brasiliensis]
20 Hb_000042_220 0.3208133325 - - PREDICTED: uncharacterized protein LOC105632809 [Jatropha curcas]

Gene co-expression network

sample Hb_024154_020 Hb_024154_020 Hb_002843_080 Hb_002843_080 Hb_024154_020--Hb_002843_080 Hb_000752_070 Hb_000752_070 Hb_024154_020--Hb_000752_070 Hb_001712_040 Hb_001712_040 Hb_024154_020--Hb_001712_040 Hb_144484_010 Hb_144484_010 Hb_024154_020--Hb_144484_010 Hb_000922_120 Hb_000922_120 Hb_024154_020--Hb_000922_120 Hb_001504_140 Hb_001504_140 Hb_024154_020--Hb_001504_140 Hb_000539_030 Hb_000539_030 Hb_002843_080--Hb_000539_030 Hb_006538_140 Hb_006538_140 Hb_002843_080--Hb_006538_140 Hb_002260_030 Hb_002260_030 Hb_002843_080--Hb_002260_030 Hb_000914_170 Hb_000914_170 Hb_002843_080--Hb_000914_170 Hb_000260_210 Hb_000260_210 Hb_002843_080--Hb_000260_210 Hb_004162_260 Hb_004162_260 Hb_000752_070--Hb_004162_260 Hb_014834_010 Hb_014834_010 Hb_000752_070--Hb_014834_010 Hb_000752_070--Hb_002843_080 Hb_001059_170 Hb_001059_170 Hb_000752_070--Hb_001059_170 Hb_002843_070 Hb_002843_070 Hb_000752_070--Hb_002843_070 Hb_001712_040--Hb_144484_010 Hb_012022_130 Hb_012022_130 Hb_001712_040--Hb_012022_130 Hb_001712_040--Hb_000922_120 Hb_001712_040--Hb_002843_080 Hb_002272_280 Hb_002272_280 Hb_001712_040--Hb_002272_280 Hb_001712_040--Hb_001504_140 Hb_144484_010--Hb_012022_130 Hb_144484_010--Hb_001504_140 Hb_001635_020 Hb_001635_020 Hb_144484_010--Hb_001635_020 Hb_144484_010--Hb_000922_120 Hb_000167_030 Hb_000167_030 Hb_144484_010--Hb_000167_030 Hb_000922_120--Hb_012022_130 Hb_023301_010 Hb_023301_010 Hb_000922_120--Hb_023301_010 Hb_001454_100 Hb_001454_100 Hb_000922_120--Hb_001454_100 Hb_011472_010 Hb_011472_010 Hb_000922_120--Hb_011472_010 Hb_005671_020 Hb_005671_020 Hb_001504_140--Hb_005671_020 Hb_001504_140--Hb_001635_020 Hb_002473_110 Hb_002473_110 Hb_001504_140--Hb_002473_110 Hb_001504_140--Hb_011472_010 Hb_158092_010 Hb_158092_010 Hb_001504_140--Hb_158092_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7282 0.532348 5.91556 107.313 0.385315 0.596774
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
202.038 20.296 163.116 2.92366 32.9133

CAGE analysis