Hb_000539_030

Information

Type rubber biosynthesis
Description Gene Name: Mevalonate diphosphate decarboxylase
Location Contig539: 56491-63798
Sequence    

Annotation

kegg
ID rcu:RCOM_0888230
description diphosphomevalonate decarboxylase, putative (EC:4.1.1.33)
nr
ID BAF98285.1
description diphosphomevelonate decarboxylase [Hevea brasiliensis]
swissprot
ID Q0P570
description Diphosphomevalonate decarboxylase OS=Bos taurus GN=MVD PE=2 SV=1
trembl
ID A9ZN03
description Diphosphomevelonate decarboxylase OS=Hevea brasiliensis GN=HbPMD PE=2 SV=1
Gene Ontology
ID GO:0005829
description diphosphomevalonate decarboxylase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47730: 56711-63948 , PASA_asmbl_47731: 56746-57257 , PASA_asmbl_47732: 56711-63948
cDNA
(Sanger)
(ID:Location)		 021_P15.ab1: 56748-57257

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000539_030 0.0 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase diphosphomevelonate decarboxylase [Hevea brasiliensis]
2 Hb_001587_070 0.1127229279 desease resistance Gene Name: NB-ARC Nbs-lrr resistance protein, putative [Theobroma cacao]
3 Hb_162275_030 0.12969389 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
4 Hb_012423_050 0.1383927652 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
5 Hb_001006_180 0.1395912641 - - PREDICTED: endonuclease V-like [Jatropha curcas]
6 Hb_004738_010 0.1435193065 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
7 Hb_000907_090 0.147188629 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
8 Hb_001762_060 0.1499856407 - - pantothenate kinase, putative [Ricinus communis]
9 Hb_003687_150 0.1543040909 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
10 Hb_000260_210 0.1556005365 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000032_040 0.156001191 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
12 Hb_001863_480 0.160656643 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
13 Hb_171554_080 0.1630341845 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
14 Hb_000914_170 0.1642215721 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
15 Hb_000742_270 0.1659705813 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
16 Hb_002659_040 0.1675124877 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
17 Hb_004324_050 0.1682864742 - - PREDICTED: spermine synthase [Jatropha curcas]
18 Hb_003849_100 0.1696741215 - - PREDICTED: putative transcription elongation factor SPT5 homolog 1 [Populus euphratica]
19 Hb_024714_060 0.1703961141 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
20 Hb_012573_030 0.172156583 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000539_030 Hb_000539_030 Hb_001587_070 Hb_001587_070 Hb_000539_030--Hb_001587_070 Hb_162275_030 Hb_162275_030 Hb_000539_030--Hb_162275_030 Hb_012423_050 Hb_012423_050 Hb_000539_030--Hb_012423_050 Hb_001006_180 Hb_001006_180 Hb_000539_030--Hb_001006_180 Hb_004738_010 Hb_004738_010 Hb_000539_030--Hb_004738_010 Hb_000907_090 Hb_000907_090 Hb_000539_030--Hb_000907_090 Hb_001587_070--Hb_162275_030 Hb_003849_100 Hb_003849_100 Hb_001587_070--Hb_003849_100 Hb_006472_050 Hb_006472_050 Hb_001587_070--Hb_006472_050 Hb_003732_010 Hb_003732_010 Hb_001587_070--Hb_003732_010 Hb_003687_150 Hb_003687_150 Hb_001587_070--Hb_003687_150 Hb_162275_030--Hb_001006_180 Hb_001762_060 Hb_001762_060 Hb_162275_030--Hb_001762_060 Hb_002735_060 Hb_002735_060 Hb_162275_030--Hb_002735_060 Hb_002119_120 Hb_002119_120 Hb_162275_030--Hb_002119_120 Hb_007382_150 Hb_007382_150 Hb_162275_030--Hb_007382_150 Hb_000069_550 Hb_000069_550 Hb_162275_030--Hb_000069_550 Hb_012423_050--Hb_001006_180 Hb_012423_050--Hb_001762_060 Hb_001427_230 Hb_001427_230 Hb_012423_050--Hb_001427_230 Hb_000398_160 Hb_000398_160 Hb_012423_050--Hb_000398_160 Hb_009265_060 Hb_009265_060 Hb_012423_050--Hb_009265_060 Hb_000032_040 Hb_000032_040 Hb_012423_050--Hb_000032_040 Hb_001006_180--Hb_001762_060 Hb_024714_060 Hb_024714_060 Hb_001006_180--Hb_024714_060 Hb_006831_030 Hb_006831_030 Hb_001006_180--Hb_006831_030 Hb_001006_180--Hb_000398_160 Hb_004738_010--Hb_002119_120 Hb_001863_480 Hb_001863_480 Hb_004738_010--Hb_001863_480 Hb_004738_010--Hb_000907_090 Hb_001439_170 Hb_001439_170 Hb_004738_010--Hb_001439_170 Hb_001711_030 Hb_001711_030 Hb_004738_010--Hb_001711_030 Hb_004738_010--Hb_000032_040 Hb_004994_260 Hb_004994_260 Hb_000907_090--Hb_004994_260 Hb_002214_050 Hb_002214_050 Hb_000907_090--Hb_002214_050 Hb_000907_090--Hb_162275_030 Hb_010344_040 Hb_010344_040 Hb_000907_090--Hb_010344_040 Hb_000907_090--Hb_002735_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.8209 3.41299 8.66056 26.7959 5.9558 24.4602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
107.401 38.7309 92.4279 10.5789 14.702

CAGE analysis