Hb_006538_140

Information

Type -
Description -
Location Contig6538: 123174-127039
Sequence    

Annotation

kegg
ID pmum:103341483
description uncharacterized LOC103341483
nr
ID XP_008243230.1
description PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
swissprot
ID -
description -
trembl
ID M5XF15
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011926mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52617: 123190-127112
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006538_140 0.0 - - PREDICTED: uncharacterized protein LOC103341483 [Prunus mume]
2 Hb_011457_090 0.1334349083 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
3 Hb_183961_010 0.1438023366 - - PREDICTED: inactive rhomboid protein 1 [Cucumis sativus]
4 Hb_027751_060 0.1493639645 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B [Jatropha curcas]
5 Hb_000322_140 0.151582166 - - hypothetical protein RCOM_1047200 [Ricinus communis]
6 Hb_000705_290 0.1547874239 - - C-4 methyl sterol oxidase, putative [Ricinus communis]
7 Hb_000260_210 0.1637830549 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000300_220 0.164051196 - - PREDICTED: uncharacterized protein LOC105632569 [Jatropha curcas]
9 Hb_001284_030 0.1695137228 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
10 Hb_000672_120 0.1697855309 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
11 Hb_001307_090 0.1702444412 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
12 Hb_004659_060 0.1716409277 - - RAS-related GTP-binding family protein [Populus trichocarpa]
13 Hb_011537_110 0.1721711493 - - hypothetical protein PRUPE_ppa013160mg [Prunus persica]
14 Hb_005527_040 0.1723227726 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
15 Hb_003687_150 0.1748129319 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
16 Hb_000529_220 0.17504866 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000834_030 0.1773919367 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
18 Hb_004336_050 0.1789688234 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
19 Hb_012794_010 0.1793169292 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
20 Hb_002260_030 0.1794006714 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]

Gene co-expression network

sample Hb_006538_140 Hb_006538_140 Hb_011457_090 Hb_011457_090 Hb_006538_140--Hb_011457_090 Hb_183961_010 Hb_183961_010 Hb_006538_140--Hb_183961_010 Hb_027751_060 Hb_027751_060 Hb_006538_140--Hb_027751_060 Hb_000322_140 Hb_000322_140 Hb_006538_140--Hb_000322_140 Hb_000705_290 Hb_000705_290 Hb_006538_140--Hb_000705_290 Hb_000260_210 Hb_000260_210 Hb_006538_140--Hb_000260_210 Hb_011537_110 Hb_011537_110 Hb_011457_090--Hb_011537_110 Hb_000224_120 Hb_000224_120 Hb_011457_090--Hb_000224_120 Hb_001153_060 Hb_001153_060 Hb_011457_090--Hb_001153_060 Hb_000300_220 Hb_000300_220 Hb_011457_090--Hb_000300_220 Hb_000635_150 Hb_000635_150 Hb_011457_090--Hb_000635_150 Hb_004336_050 Hb_004336_050 Hb_011457_090--Hb_004336_050 Hb_001008_090 Hb_001008_090 Hb_183961_010--Hb_001008_090 Hb_183961_010--Hb_000300_220 Hb_005278_040 Hb_005278_040 Hb_183961_010--Hb_005278_040 Hb_183961_010--Hb_011457_090 Hb_183961_010--Hb_011537_110 Hb_004659_060 Hb_004659_060 Hb_183961_010--Hb_004659_060 Hb_000056_250 Hb_000056_250 Hb_027751_060--Hb_000056_250 Hb_000096_150 Hb_000096_150 Hb_027751_060--Hb_000096_150 Hb_000046_350 Hb_000046_350 Hb_027751_060--Hb_000046_350 Hb_005167_030 Hb_005167_030 Hb_027751_060--Hb_005167_030 Hb_000417_260 Hb_000417_260 Hb_027751_060--Hb_000417_260 Hb_001284_030 Hb_001284_030 Hb_027751_060--Hb_001284_030 Hb_000322_140--Hb_000300_220 Hb_002878_010 Hb_002878_010 Hb_000322_140--Hb_002878_010 Hb_001953_090 Hb_001953_090 Hb_000322_140--Hb_001953_090 Hb_000322_140--Hb_004659_060 Hb_001461_010 Hb_001461_010 Hb_000322_140--Hb_001461_010 Hb_004374_140 Hb_004374_140 Hb_000322_140--Hb_004374_140 Hb_161175_010 Hb_161175_010 Hb_000705_290--Hb_161175_010 Hb_006442_020 Hb_006442_020 Hb_000705_290--Hb_006442_020 Hb_001136_060 Hb_001136_060 Hb_000705_290--Hb_001136_060 Hb_000272_140 Hb_000272_140 Hb_000705_290--Hb_000272_140 Hb_000042_200 Hb_000042_200 Hb_000705_290--Hb_000042_200 Hb_000705_290--Hb_001284_030 Hb_000260_210--Hb_000300_220 Hb_006472_050 Hb_006472_050 Hb_000260_210--Hb_006472_050 Hb_000260_210--Hb_011457_090 Hb_000329_180 Hb_000329_180 Hb_000260_210--Hb_000329_180 Hb_011377_050 Hb_011377_050 Hb_000260_210--Hb_011377_050 Hb_002182_030 Hb_002182_030 Hb_000260_210--Hb_002182_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.3618 3.71226 7.33002 89.7268 10.0148 54.2484
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
147.816 77.5576 112.664 34.4609 50.722

CAGE analysis