Hb_002843_070

Information

Type -
Description -
Location Contig2843: 65618-66061
Sequence    

Annotation

kegg
ID gmx:100305624
description uncharacterized LOC100305624
nr
ID AFK34550.1
description unknown [Lotus japonicus]
swissprot
ID -
description -
trembl
ID I3S2Q8
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002843_070 0.0 - - unknown [Lotus japonicus]
2 Hb_071947_010 0.1798864801 - - -
3 Hb_008948_100 0.1837813841 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
4 Hb_004738_010 0.1874486754 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
5 Hb_002027_400 0.1892132132 - - PREDICTED: auxin response factor 23-like [Jatropha curcas]
6 Hb_001863_480 0.1927923418 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
7 Hb_000539_030 0.193317488 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase diphosphomevelonate decarboxylase [Hevea brasiliensis]
8 Hb_000212_350 0.1992180705 - - glucosamine-fructose-6-phosphate aminotransferase, putative [Ricinus communis]
9 Hb_164926_030 0.2003454683 - - PREDICTED: uncharacterized protein LOC105645602 [Jatropha curcas]
10 Hb_007831_020 0.2017225968 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002471_100 0.2037567146 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
12 Hb_080477_050 0.2041854131 - - hypothetical protein M569_16374 [Genlisea aurea]
13 Hb_005375_020 0.2079673339 - - PREDICTED: endoribonuclease Dicer homolog 1-like [Nicotiana sylvestris]
14 Hb_003849_100 0.2086530914 - - PREDICTED: putative transcription elongation factor SPT5 homolog 1 [Populus euphratica]
15 Hb_028487_030 0.2088685634 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001587_070 0.2090612282 desease resistance Gene Name: NB-ARC Nbs-lrr resistance protein, putative [Theobroma cacao]
17 Hb_001439_170 0.2119409793 - - PREDICTED: pectinesterase 31-like isoform X2 [Jatropha curcas]
18 Hb_001828_080 0.2141404085 - - glyceraldehyde 3-phosphate dehydrogenase family protein [Populus trichocarpa]
19 Hb_000169_140 0.2146578683 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
20 Hb_000258_330 0.2149821948 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002843_070 Hb_002843_070 Hb_071947_010 Hb_071947_010 Hb_002843_070--Hb_071947_010 Hb_008948_100 Hb_008948_100 Hb_002843_070--Hb_008948_100 Hb_004738_010 Hb_004738_010 Hb_002843_070--Hb_004738_010 Hb_002027_400 Hb_002027_400 Hb_002843_070--Hb_002027_400 Hb_001863_480 Hb_001863_480 Hb_002843_070--Hb_001863_480 Hb_000539_030 Hb_000539_030 Hb_002843_070--Hb_000539_030 Hb_000622_040 Hb_000622_040 Hb_071947_010--Hb_000622_040 Hb_005000_070 Hb_005000_070 Hb_071947_010--Hb_005000_070 Hb_007924_020 Hb_007924_020 Hb_071947_010--Hb_007924_020 Hb_001160_030 Hb_001160_030 Hb_071947_010--Hb_001160_030 Hb_061802_010 Hb_061802_010 Hb_071947_010--Hb_061802_010 Hb_071947_010--Hb_001863_480 Hb_028487_030 Hb_028487_030 Hb_008948_100--Hb_028487_030 Hb_029904_030 Hb_029904_030 Hb_008948_100--Hb_029904_030 Hb_000027_150 Hb_000027_150 Hb_008948_100--Hb_000027_150 Hb_002774_050 Hb_002774_050 Hb_008948_100--Hb_002774_050 Hb_001357_120 Hb_001357_120 Hb_008948_100--Hb_001357_120 Hb_002260_030 Hb_002260_030 Hb_008948_100--Hb_002260_030 Hb_002119_120 Hb_002119_120 Hb_004738_010--Hb_002119_120 Hb_004738_010--Hb_001863_480 Hb_000907_090 Hb_000907_090 Hb_004738_010--Hb_000907_090 Hb_001439_170 Hb_001439_170 Hb_004738_010--Hb_001439_170 Hb_001711_030 Hb_001711_030 Hb_004738_010--Hb_001711_030 Hb_000032_040 Hb_000032_040 Hb_004738_010--Hb_000032_040 Hb_000012_130 Hb_000012_130 Hb_002027_400--Hb_000012_130 Hb_002027_400--Hb_001160_030 Hb_002759_230 Hb_002759_230 Hb_002027_400--Hb_002759_230 Hb_002909_060 Hb_002909_060 Hb_002027_400--Hb_002909_060 Hb_002027_400--Hb_001439_170 Hb_002027_400--Hb_028487_030 Hb_001863_480--Hb_001711_030 Hb_003408_020 Hb_003408_020 Hb_001863_480--Hb_003408_020 Hb_001863_480--Hb_001439_170 Hb_171554_080 Hb_171554_080 Hb_001863_480--Hb_171554_080 Hb_002539_080 Hb_002539_080 Hb_001863_480--Hb_002539_080 Hb_001587_070 Hb_001587_070 Hb_000539_030--Hb_001587_070 Hb_162275_030 Hb_162275_030 Hb_000539_030--Hb_162275_030 Hb_012423_050 Hb_012423_050 Hb_000539_030--Hb_012423_050 Hb_001006_180 Hb_001006_180 Hb_000539_030--Hb_001006_180 Hb_000539_030--Hb_004738_010 Hb_000539_030--Hb_000907_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.073 5.72782 6.22694 3.51719 3.92148 5.2635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.8175 9.03746 28.0933 2.77398 9.84125

CAGE analysis