Hb_000752_070

Information

Type -
Description -
Location Contig752: 144999-145981
Sequence    

Annotation

kegg
ID rcu:RCOM_0978090
description Blue copper protein precursor, putative
nr
ID XP_012081824.1
description PREDICTED: mavicyanin-like [Jatropha curcas]
swissprot
ID Q41001
description Blue copper protein OS=Pisum sativum PE=2 SV=1
trembl
ID B9S5L2
description Blue copper protein, putative OS=Ricinus communis GN=RCOM_0978090 PE=4 SV=1
Gene Ontology
ID GO:0009055
description blue copper protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000752_070 0.0 - - PREDICTED: mavicyanin-like [Jatropha curcas]
2 Hb_004162_260 0.2092368402 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
3 Hb_024154_020 0.2443412442 - - polyphenol oxidase [Hevea brasiliensis]
4 Hb_014834_010 0.2449785248 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
5 Hb_002843_080 0.2463692994 - - SAUR family protein [Theobroma cacao]
6 Hb_001059_170 0.25096782 - - hexose transporter 1 [Hevea brasiliensis]
7 Hb_002843_070 0.2589348151 - - unknown [Lotus japonicus]
8 Hb_014497_120 0.2686027223 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
9 Hb_000679_220 0.2717576594 - - PREDICTED: uncharacterized protein LOC105637638 [Jatropha curcas]
10 Hb_007831_020 0.284901273 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000539_030 0.2872408742 rubber biosynthesis Gene Name: Mevalonate diphosphate decarboxylase diphosphomevelonate decarboxylase [Hevea brasiliensis]
12 Hb_002836_080 0.2891833462 - - -
13 Hb_000001_080 0.2913015113 - - -
14 Hb_001059_160 0.2915744378 - - hexose transporter 1 [Hevea brasiliensis]
15 Hb_004800_020 0.2917367623 - - PREDICTED: TPR repeat-containing thioredoxin TTL4-like [Jatropha curcas]
16 Hb_002260_030 0.2926161636 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
17 Hb_006775_030 0.2926671058 - - MADS-box transcription factor, partial [Clutia sp. DAV B80.252/F1980.8371]
18 Hb_003333_010 0.2938765268 - - PREDICTED: uncharacterized protein LOC105645175 [Jatropha curcas]
19 Hb_000914_170 0.2947148302 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
20 Hb_002936_080 0.3002023179 - - Protein bem46, putative [Ricinus communis]

Gene co-expression network

sample Hb_000752_070 Hb_000752_070 Hb_004162_260 Hb_004162_260 Hb_000752_070--Hb_004162_260 Hb_024154_020 Hb_024154_020 Hb_000752_070--Hb_024154_020 Hb_014834_010 Hb_014834_010 Hb_000752_070--Hb_014834_010 Hb_002843_080 Hb_002843_080 Hb_000752_070--Hb_002843_080 Hb_001059_170 Hb_001059_170 Hb_000752_070--Hb_001059_170 Hb_002843_070 Hb_002843_070 Hb_000752_070--Hb_002843_070 Hb_002936_080 Hb_002936_080 Hb_004162_260--Hb_002936_080 Hb_004162_260--Hb_014834_010 Hb_002260_030 Hb_002260_030 Hb_004162_260--Hb_002260_030 Hb_007520_010 Hb_007520_010 Hb_004162_260--Hb_007520_010 Hb_000914_170 Hb_000914_170 Hb_004162_260--Hb_000914_170 Hb_000935_030 Hb_000935_030 Hb_004162_260--Hb_000935_030 Hb_024154_020--Hb_002843_080 Hb_001712_040 Hb_001712_040 Hb_024154_020--Hb_001712_040 Hb_144484_010 Hb_144484_010 Hb_024154_020--Hb_144484_010 Hb_000922_120 Hb_000922_120 Hb_024154_020--Hb_000922_120 Hb_001504_140 Hb_001504_140 Hb_024154_020--Hb_001504_140 Hb_011379_010 Hb_011379_010 Hb_014834_010--Hb_011379_010 Hb_014834_010--Hb_000914_170 Hb_000676_340 Hb_000676_340 Hb_014834_010--Hb_000676_340 Hb_000049_110 Hb_000049_110 Hb_014834_010--Hb_000049_110 Hb_001045_040 Hb_001045_040 Hb_014834_010--Hb_001045_040 Hb_000539_030 Hb_000539_030 Hb_002843_080--Hb_000539_030 Hb_006538_140 Hb_006538_140 Hb_002843_080--Hb_006538_140 Hb_002843_080--Hb_002260_030 Hb_002843_080--Hb_000914_170 Hb_000260_210 Hb_000260_210 Hb_002843_080--Hb_000260_210 Hb_001059_160 Hb_001059_160 Hb_001059_170--Hb_001059_160 Hb_001059_170--Hb_002260_030 Hb_001357_120 Hb_001357_120 Hb_001059_170--Hb_001357_120 Hb_002918_050 Hb_002918_050 Hb_001059_170--Hb_002918_050 Hb_000679_220 Hb_000679_220 Hb_001059_170--Hb_000679_220 Hb_001059_150 Hb_001059_150 Hb_001059_170--Hb_001059_150 Hb_071947_010 Hb_071947_010 Hb_002843_070--Hb_071947_010 Hb_008948_100 Hb_008948_100 Hb_002843_070--Hb_008948_100 Hb_004738_010 Hb_004738_010 Hb_002843_070--Hb_004738_010 Hb_002027_400 Hb_002027_400 Hb_002843_070--Hb_002027_400 Hb_001863_480 Hb_001863_480 Hb_002843_070--Hb_001863_480 Hb_002843_070--Hb_000539_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.5371 0.110444 4.4793 5.90079 0 0.142103
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.6894 2.86462 19.1383 0.459643 9.31775

CAGE analysis