Hb_000049_110

Information

Type -
Description -
Location Contig49: 84293-86596
Sequence    

Annotation

kegg
ID rcu:RCOM_0542020
description Cucumisin precursor, putative (EC:1.3.1.74)
nr
ID XP_012085216.1
description PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
swissprot
ID O64495
description Subtilisin-like protease SBT1.2 OS=Arabidopsis thaliana GN=SBT1.2 PE=2 SV=1
trembl
ID B9SKL8
description Cucumisin, putative OS=Ricinus communis GN=RCOM_0542020 PE=4 SV=1
Gene Ontology
ID GO:0009897
description subtilisin-like protease sdd1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45256: 85201-85502 , PASA_asmbl_45257: 85873-86243 , PASA_asmbl_45258: 86290-86570
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000049_110 0.0 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
2 Hb_001488_030 0.1355625067 - - biotin carboxyl carrier protein [Vernicia fordii]
3 Hb_046823_010 0.1505360738 - - hypothetical protein CICLE_v100021301mg, partial [Citrus clementina]
4 Hb_003411_090 0.1536483908 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
5 Hb_000525_050 0.1572183316 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000796_010 0.1649848006 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
7 Hb_001250_070 0.1678579344 - - ATP-citrate synthase, putative [Ricinus communis]
8 Hb_003082_030 0.1769627918 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
9 Hb_169116_010 0.1798374275 - - PREDICTED: fatty-acid-binding protein 1 [Jatropha curcas]
10 Hb_000122_190 0.1799382993 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
11 Hb_000175_230 0.1805127595 - - PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
12 Hb_000442_040 0.1810314202 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic [Jatropha curcas]
13 Hb_003126_130 0.1844603419 - - inositol-1-monophosphatase family protein [Populus trichocarpa]
14 Hb_002909_020 0.1894206467 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
15 Hb_000365_130 0.1917123009 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
16 Hb_002811_290 0.1923488164 - - aldo/keto reductase, putative [Ricinus communis]
17 Hb_004994_210 0.1938516493 - - phosphomannomutase family protein [Populus trichocarpa]
18 Hb_004672_030 0.1942039047 - - proline oxidase [Manihot esculenta]
19 Hb_000590_120 0.1966602156 - - dehydroascorbate reductase, putative [Ricinus communis]
20 Hb_000923_060 0.1971324281 - - PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]

Gene co-expression network

sample Hb_000049_110 Hb_000049_110 Hb_001488_030 Hb_001488_030 Hb_000049_110--Hb_001488_030 Hb_046823_010 Hb_046823_010 Hb_000049_110--Hb_046823_010 Hb_003411_090 Hb_003411_090 Hb_000049_110--Hb_003411_090 Hb_000525_050 Hb_000525_050 Hb_000049_110--Hb_000525_050 Hb_000796_010 Hb_000796_010 Hb_000049_110--Hb_000796_010 Hb_001250_070 Hb_001250_070 Hb_000049_110--Hb_001250_070 Hb_000122_190 Hb_000122_190 Hb_001488_030--Hb_000122_190 Hb_000005_180 Hb_000005_180 Hb_001488_030--Hb_000005_180 Hb_000035_240 Hb_000035_240 Hb_001488_030--Hb_000035_240 Hb_001541_110 Hb_001541_110 Hb_001488_030--Hb_001541_110 Hb_001587_180 Hb_001587_180 Hb_001488_030--Hb_001587_180 Hb_007416_110 Hb_007416_110 Hb_046823_010--Hb_007416_110 Hb_046823_010--Hb_000525_050 Hb_003531_070 Hb_003531_070 Hb_046823_010--Hb_003531_070 Hb_003040_030 Hb_003040_030 Hb_046823_010--Hb_003040_030 Hb_000139_340 Hb_000139_340 Hb_046823_010--Hb_000139_340 Hb_000317_260 Hb_000317_260 Hb_003411_090--Hb_000317_260 Hb_003266_030 Hb_003266_030 Hb_003411_090--Hb_003266_030 Hb_000167_110 Hb_000167_110 Hb_003411_090--Hb_000167_110 Hb_004951_060 Hb_004951_060 Hb_003411_090--Hb_004951_060 Hb_011671_260 Hb_011671_260 Hb_003411_090--Hb_011671_260 Hb_004452_120 Hb_004452_120 Hb_003411_090--Hb_004452_120 Hb_000525_050--Hb_003411_090 Hb_012244_010 Hb_012244_010 Hb_000525_050--Hb_012244_010 Hb_001399_010 Hb_001399_010 Hb_000525_050--Hb_001399_010 Hb_001863_020 Hb_001863_020 Hb_000525_050--Hb_001863_020 Hb_004128_070 Hb_004128_070 Hb_000525_050--Hb_004128_070 Hb_029920_030 Hb_029920_030 Hb_000525_050--Hb_029920_030 Hb_001114_080 Hb_001114_080 Hb_000796_010--Hb_001114_080 Hb_001019_100 Hb_001019_100 Hb_000796_010--Hb_001019_100 Hb_003126_130 Hb_003126_130 Hb_000796_010--Hb_003126_130 Hb_007425_010 Hb_007425_010 Hb_000796_010--Hb_007425_010 Hb_066720_010 Hb_066720_010 Hb_000796_010--Hb_066720_010 Hb_001059_160 Hb_001059_160 Hb_000796_010--Hb_001059_160 Hb_003935_060 Hb_003935_060 Hb_001250_070--Hb_003935_060 Hb_000721_030 Hb_000721_030 Hb_001250_070--Hb_000721_030 Hb_000365_130 Hb_000365_130 Hb_001250_070--Hb_000365_130 Hb_001250_070--Hb_003411_090 Hb_001504_030 Hb_001504_030 Hb_001250_070--Hb_001504_030 Hb_001022_030 Hb_001022_030 Hb_001250_070--Hb_001022_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.746943 0.478508 2.19092 1.38174 0.132365 0.203305
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.47194 0.623037 0.925371 0.627969 1.48296

CAGE analysis