Hb_046823_010

Information

Type -
Description -
Location Contig46823: 261-683
Sequence    

Annotation

kegg
ID cic:CICLE_v100021301m
description hypothetical protein
nr
ID XP_006432306.1
description hypothetical protein CICLE_v100021301mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4T7J2
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100021301mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_046823_010 0.0 - - hypothetical protein CICLE_v100021301mg, partial [Citrus clementina]
2 Hb_007416_110 0.1471856983 - - PREDICTED: probable cyclic nucleotide-gated ion channel 14 isoform X1 [Jatropha curcas]
3 Hb_000049_110 0.1505360738 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
4 Hb_000525_050 0.1545380747 - - conserved hypothetical protein [Ricinus communis]
5 Hb_003531_070 0.1627529796 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
6 Hb_003040_030 0.1684501712 - - PREDICTED: NADP-dependent malic enzyme isoform X1 [Jatropha curcas]
7 Hb_000139_340 0.1728972753 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000742_010 0.1730621921 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
9 Hb_003411_090 0.1730973292 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
10 Hb_003207_010 0.1792468247 - - PREDICTED: phospholipase D beta 1-like [Jatropha curcas]
11 Hb_002045_060 0.1820893069 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
12 Hb_005276_040 0.1821955332 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
13 Hb_000174_260 0.1836817561 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Jatropha curcas]
14 Hb_002157_030 0.1845643919 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001250_090 0.187027552 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]
16 Hb_000648_050 0.1879835695 - - PREDICTED: putative methylesterase 14, chloroplastic [Jatropha curcas]
17 Hb_000510_080 0.1883950856 - - hypothetical protein CICLE_v10021453mg [Citrus clementina]
18 Hb_006153_040 0.1890644869 - - hypothetical protein PRUPE_ppa014788mg [Prunus persica]
19 Hb_001998_200 0.1910290119 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
20 Hb_000076_210 0.1914776436 - - PREDICTED: electron transfer flavoprotein subunit alpha, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_046823_010 Hb_046823_010 Hb_007416_110 Hb_007416_110 Hb_046823_010--Hb_007416_110 Hb_000049_110 Hb_000049_110 Hb_046823_010--Hb_000049_110 Hb_000525_050 Hb_000525_050 Hb_046823_010--Hb_000525_050 Hb_003531_070 Hb_003531_070 Hb_046823_010--Hb_003531_070 Hb_003040_030 Hb_003040_030 Hb_046823_010--Hb_003040_030 Hb_000139_340 Hb_000139_340 Hb_046823_010--Hb_000139_340 Hb_000465_150 Hb_000465_150 Hb_007416_110--Hb_000465_150 Hb_002281_020 Hb_002281_020 Hb_007416_110--Hb_002281_020 Hb_000510_170 Hb_000510_170 Hb_007416_110--Hb_000510_170 Hb_003440_020 Hb_003440_020 Hb_007416_110--Hb_003440_020 Hb_002486_080 Hb_002486_080 Hb_007416_110--Hb_002486_080 Hb_000638_130 Hb_000638_130 Hb_007416_110--Hb_000638_130 Hb_001488_030 Hb_001488_030 Hb_000049_110--Hb_001488_030 Hb_003411_090 Hb_003411_090 Hb_000049_110--Hb_003411_090 Hb_000049_110--Hb_000525_050 Hb_000796_010 Hb_000796_010 Hb_000049_110--Hb_000796_010 Hb_001250_070 Hb_001250_070 Hb_000049_110--Hb_001250_070 Hb_000525_050--Hb_003411_090 Hb_012244_010 Hb_012244_010 Hb_000525_050--Hb_012244_010 Hb_001399_010 Hb_001399_010 Hb_000525_050--Hb_001399_010 Hb_001863_020 Hb_001863_020 Hb_000525_050--Hb_001863_020 Hb_004128_070 Hb_004128_070 Hb_000525_050--Hb_004128_070 Hb_029920_030 Hb_029920_030 Hb_000525_050--Hb_029920_030 Hb_000665_140 Hb_000665_140 Hb_003531_070--Hb_000665_140 Hb_000580_120 Hb_000580_120 Hb_003531_070--Hb_000580_120 Hb_003058_120 Hb_003058_120 Hb_003531_070--Hb_003058_120 Hb_000029_140 Hb_000029_140 Hb_003531_070--Hb_000029_140 Hb_000120_080 Hb_000120_080 Hb_003531_070--Hb_000120_080 Hb_002615_150 Hb_002615_150 Hb_003531_070--Hb_002615_150 Hb_084886_010 Hb_084886_010 Hb_003040_030--Hb_084886_010 Hb_000252_110 Hb_000252_110 Hb_003040_030--Hb_000252_110 Hb_004032_120 Hb_004032_120 Hb_003040_030--Hb_004032_120 Hb_003207_010 Hb_003207_010 Hb_003040_030--Hb_003207_010 Hb_005098_030 Hb_005098_030 Hb_003040_030--Hb_005098_030 Hb_002900_110 Hb_002900_110 Hb_000139_340--Hb_002900_110 Hb_180378_010 Hb_180378_010 Hb_000139_340--Hb_180378_010 Hb_094970_010 Hb_094970_010 Hb_000139_340--Hb_094970_010 Hb_005015_110 Hb_005015_110 Hb_000139_340--Hb_005015_110 Hb_001571_060 Hb_001571_060 Hb_000139_340--Hb_001571_060 Hb_005218_080 Hb_005218_080 Hb_000139_340--Hb_005218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.26135 2.55315 7.99266 5.43389 0.664898 0.275457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.61149 2.25463 5.27373 6.81588 7.81699

CAGE analysis