Hb_002615_150

Information

Type -
Description -
Location Contig2615: 171323-184638
Sequence    

Annotation

kegg
ID pop:POPTR_0009s07350g
description POPTRDRAFT_879370; hypothetical protein
nr
ID XP_012065873.1
description PREDICTED: crt homolog 1-like [Jatropha curcas]
swissprot
ID Q9GSB0
description Crt homolog 1 OS=Dictyostelium discoideum GN=crtp1 PE=2 SV=1
trembl
ID A0A067LFF8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22757 PE=4 SV=1
Gene Ontology
ID GO:0055085
description crt homolog 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27359: 171457-184453 , PASA_asmbl_27360: 177536-177930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002615_150 0.0 - - PREDICTED: crt homolog 1-like [Jatropha curcas]
2 Hb_172426_030 0.0920113621 - - acetylglucosaminyltransferase, putative [Ricinus communis]
3 Hb_000029_140 0.0948927546 - - PREDICTED: putative GDP-L-fucose synthase 2 [Populus euphratica]
4 Hb_003531_070 0.1010126757 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
5 Hb_001141_420 0.1169762366 - - PREDICTED: uncharacterized protein LOC105631978 isoform X1 [Jatropha curcas]
6 Hb_000580_120 0.1177917732 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
7 Hb_003058_120 0.1177985167 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
8 Hb_002804_040 0.1207734796 - - PREDICTED: fasciclin-like arabinogalactan protein 4 [Jatropha curcas]
9 Hb_012262_030 0.1211171498 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
10 Hb_000367_090 0.1213869689 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
11 Hb_002357_060 0.1216732255 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
12 Hb_000035_390 0.1219903165 - - hypothetical protein CISIN_1g003355mg [Citrus sinensis]
13 Hb_000012_310 0.1234544056 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
14 Hb_000120_370 0.1244681822 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
15 Hb_009898_040 0.1248963749 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006824_010 0.125057194 - - PREDICTED: origin of replication complex subunit 4 [Jatropha curcas]
17 Hb_000023_300 0.1250596718 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
18 Hb_002471_090 0.1251385785 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
19 Hb_066842_010 0.1255958579 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
20 Hb_028928_010 0.1258133326 - - hypothetical protein CISIN_1g0030132mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_002615_150 Hb_002615_150 Hb_172426_030 Hb_172426_030 Hb_002615_150--Hb_172426_030 Hb_000029_140 Hb_000029_140 Hb_002615_150--Hb_000029_140 Hb_003531_070 Hb_003531_070 Hb_002615_150--Hb_003531_070 Hb_001141_420 Hb_001141_420 Hb_002615_150--Hb_001141_420 Hb_000580_120 Hb_000580_120 Hb_002615_150--Hb_000580_120 Hb_003058_120 Hb_003058_120 Hb_002615_150--Hb_003058_120 Hb_189216_010 Hb_189216_010 Hb_172426_030--Hb_189216_010 Hb_002471_090 Hb_002471_090 Hb_172426_030--Hb_002471_090 Hb_000704_030 Hb_000704_030 Hb_172426_030--Hb_000704_030 Hb_012262_030 Hb_012262_030 Hb_172426_030--Hb_012262_030 Hb_000367_090 Hb_000367_090 Hb_172426_030--Hb_000367_090 Hb_000227_160 Hb_000227_160 Hb_172426_030--Hb_000227_160 Hb_149985_010 Hb_149985_010 Hb_000029_140--Hb_149985_010 Hb_011218_090 Hb_011218_090 Hb_000029_140--Hb_011218_090 Hb_000120_080 Hb_000120_080 Hb_000029_140--Hb_000120_080 Hb_000012_310 Hb_000012_310 Hb_000029_140--Hb_000012_310 Hb_000029_140--Hb_003058_120 Hb_005634_010 Hb_005634_010 Hb_000029_140--Hb_005634_010 Hb_000665_140 Hb_000665_140 Hb_003531_070--Hb_000665_140 Hb_003531_070--Hb_000580_120 Hb_003531_070--Hb_003058_120 Hb_003531_070--Hb_000029_140 Hb_003531_070--Hb_000120_080 Hb_000603_160 Hb_000603_160 Hb_001141_420--Hb_000603_160 Hb_023371_020 Hb_023371_020 Hb_001141_420--Hb_023371_020 Hb_005563_070 Hb_005563_070 Hb_001141_420--Hb_005563_070 Hb_001141_420--Hb_003058_120 Hb_000220_100 Hb_000220_100 Hb_001141_420--Hb_000220_100 Hb_168978_010 Hb_168978_010 Hb_001141_420--Hb_168978_010 Hb_000580_120--Hb_000120_080 Hb_000580_120--Hb_005634_010 Hb_000836_460 Hb_000836_460 Hb_000580_120--Hb_000836_460 Hb_000011_060 Hb_000011_060 Hb_000580_120--Hb_000011_060 Hb_000352_310 Hb_000352_310 Hb_000580_120--Hb_000352_310 Hb_000189_550 Hb_000189_550 Hb_000580_120--Hb_000189_550 Hb_000853_150 Hb_000853_150 Hb_003058_120--Hb_000853_150 Hb_005588_060 Hb_005588_060 Hb_003058_120--Hb_005588_060 Hb_023001_040 Hb_023001_040 Hb_003058_120--Hb_023001_040 Hb_000392_420 Hb_000392_420 Hb_003058_120--Hb_000392_420 Hb_000167_010 Hb_000167_010 Hb_003058_120--Hb_000167_010 Hb_004157_050 Hb_004157_050 Hb_003058_120--Hb_004157_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.30132 2.9376 3.24736 7.10953 1.26213 1.07906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.37174 2.70265 3.32789 5.55218 4.30637

CAGE analysis