Hb_004032_120

Information

Type -
Description -
Location Contig4032: 142302-146785
Sequence    

Annotation

kegg
ID bvg:104896902
description uncharacterized LOC104896902
nr
ID XP_010681990.1
description PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004032_120 0.0 - - PREDICTED: uncharacterized protein LOC104896902 [Beta vulgaris subsp. vulgaris]
2 Hb_000252_110 0.1599746019 - - -
3 Hb_003040_030 0.1817470359 - - PREDICTED: NADP-dependent malic enzyme isoform X1 [Jatropha curcas]
4 Hb_001433_110 0.2034109182 - - PREDICTED: uncharacterized protein LOC105647469 isoform X1 [Jatropha curcas]
5 Hb_004453_080 0.2091128383 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
6 Hb_007432_020 0.2130601562 - - hypothetical protein POPTR_0010s13310g [Populus trichocarpa]
7 Hb_000154_040 0.219399803 - - hypothetical protein JCGZ_25602 [Jatropha curcas]
8 Hb_000041_240 0.223937614 - - glutaredoxin [Hevea brasiliensis]
9 Hb_000184_230 0.2249552373 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Jatropha curcas]
10 Hb_000031_260 0.2267751321 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
11 Hb_000345_250 0.2268686269 - - cullin 1-like protein [Hevea brasiliensis]
12 Hb_000009_660 0.2275259927 - - -
13 Hb_000172_190 0.2275491885 - - PREDICTED: uncharacterized protein LOC105650824 [Jatropha curcas]
14 Hb_000563_190 0.2354704251 - - hypothetical protein PRUPE_ppa002828mg [Prunus persica]
15 Hb_003683_080 0.2363354449 - - Angio-associated migratory cell protein, putative [Ricinus communis]
16 Hb_001387_020 0.2364773172 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
17 Hb_048937_060 0.2384447549 - - PREDICTED: probable rhamnogalacturonate lyase B isoform X1 [Jatropha curcas]
18 Hb_001332_040 0.2390909186 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
19 Hb_000742_280 0.239209521 - - ATP binding protein, putative [Ricinus communis]
20 Hb_004931_100 0.241762988 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_004032_120 Hb_004032_120 Hb_000252_110 Hb_000252_110 Hb_004032_120--Hb_000252_110 Hb_003040_030 Hb_003040_030 Hb_004032_120--Hb_003040_030 Hb_001433_110 Hb_001433_110 Hb_004032_120--Hb_001433_110 Hb_004453_080 Hb_004453_080 Hb_004032_120--Hb_004453_080 Hb_007432_020 Hb_007432_020 Hb_004032_120--Hb_007432_020 Hb_000154_040 Hb_000154_040 Hb_004032_120--Hb_000154_040 Hb_000252_110--Hb_004453_080 Hb_005656_100 Hb_005656_100 Hb_000252_110--Hb_005656_100 Hb_000041_240 Hb_000041_240 Hb_000252_110--Hb_000041_240 Hb_004931_100 Hb_004931_100 Hb_000252_110--Hb_004931_100 Hb_001171_050 Hb_001171_050 Hb_000252_110--Hb_001171_050 Hb_000252_110--Hb_001433_110 Hb_084886_010 Hb_084886_010 Hb_003040_030--Hb_084886_010 Hb_046823_010 Hb_046823_010 Hb_003040_030--Hb_046823_010 Hb_003040_030--Hb_000252_110 Hb_003207_010 Hb_003207_010 Hb_003040_030--Hb_003207_010 Hb_005098_030 Hb_005098_030 Hb_003040_030--Hb_005098_030 Hb_001433_110--Hb_004453_080 Hb_002374_380 Hb_002374_380 Hb_001433_110--Hb_002374_380 Hb_001221_570 Hb_001221_570 Hb_001433_110--Hb_001221_570 Hb_028487_170 Hb_028487_170 Hb_001433_110--Hb_028487_170 Hb_001059_120 Hb_001059_120 Hb_001433_110--Hb_001059_120 Hb_007850_080 Hb_007850_080 Hb_004453_080--Hb_007850_080 Hb_004453_080--Hb_028487_170 Hb_003442_070 Hb_003442_070 Hb_004453_080--Hb_003442_070 Hb_008226_080 Hb_008226_080 Hb_004453_080--Hb_008226_080 Hb_007432_020--Hb_004931_100 Hb_004128_110 Hb_004128_110 Hb_007432_020--Hb_004128_110 Hb_000317_400 Hb_000317_400 Hb_007432_020--Hb_000317_400 Hb_000692_010 Hb_000692_010 Hb_007432_020--Hb_000692_010 Hb_105602_010 Hb_105602_010 Hb_007432_020--Hb_105602_010 Hb_002217_230 Hb_002217_230 Hb_007432_020--Hb_002217_230 Hb_000510_080 Hb_000510_080 Hb_000154_040--Hb_000510_080 Hb_002872_050 Hb_002872_050 Hb_000154_040--Hb_002872_050 Hb_000742_280 Hb_000742_280 Hb_000154_040--Hb_000742_280 Hb_007894_050 Hb_007894_050 Hb_000154_040--Hb_007894_050 Hb_000085_350 Hb_000085_350 Hb_000154_040--Hb_000085_350 Hb_005345_010 Hb_005345_010 Hb_000154_040--Hb_005345_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.035491 0.0147387 0.082452 0.0416256 0 0.0155947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.24318 0.127526 0.0593109 0.204339 0.0659837

CAGE analysis