Hb_007432_020

Information

Type -
Description -
Location Contig7432: 15202-16232
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13310g
description POPTRDRAFT_658876; hypothetical protein
nr
ID XP_002314854.1
description hypothetical protein POPTR_0010s13310g [Populus trichocarpa]
swissprot
ID Q8LGG8
description Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2
trembl
ID B9HWG5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s13310g PE=4 SV=1
Gene Ontology
ID GO:0006950
description universal stress protein a-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56569: 15192-16243
cDNA
(Sanger)
(ID:Location)		 004_K03.ab1: 15202-16231 , 016_E11.ab1: 15230-16243 , 019_E09.ab1: 15192-16243 , 021_M09.ab1: 15207-16230 , 029_G03.ab1: 15308-16243 , 031_E24.ab1: 15208-16243 , 034_E23.ab1: 15208-16230 , 036_P11.ab1: 15208-16243 , 043_K01.ab1: 15202-16230 , 048_N11.ab1: 15203-16243 , 048_N22.ab1: 15210-16230

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007432_020 0.0 - - hypothetical protein POPTR_0010s13310g [Populus trichocarpa]
2 Hb_004931_100 0.1433747454 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]
3 Hb_004128_110 0.1588241345 - - glutathione S-transferase L3-like [Jatropha curcas]
4 Hb_000317_400 0.1633606446 transcription factor TF Family: zf-HD conserved hypothetical protein [Ricinus communis]
5 Hb_000692_010 0.168440031 - - PREDICTED: uncharacterized protein LOC105635295 [Jatropha curcas]
6 Hb_105602_010 0.1769628505 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
7 Hb_002217_230 0.1813652204 - - PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
8 Hb_000184_230 0.1815309942 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 9-like [Jatropha curcas]
9 Hb_005873_010 0.1815927035 - - cysteine desulfurylase, putative [Ricinus communis]
10 Hb_001332_040 0.1827714057 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
11 Hb_094437_060 0.185575022 - - PREDICTED: cytochrome B5 isoform D-like [Jatropha curcas]
12 Hb_000345_250 0.1858209294 - - cullin 1-like protein [Hevea brasiliensis]
13 Hb_000329_250 0.1865488073 - - PREDICTED: vesicle-associated protein 1-3 isoform X1 [Fragaria vesca subsp. vesca]
14 Hb_006698_030 0.1872479935 - - PREDICTED: uncharacterized protein LOC105633969 [Jatropha curcas]
15 Hb_000252_110 0.1904292468 - - -
16 Hb_000742_110 0.1910393065 - - hypothetical protein JCGZ_09215 [Jatropha curcas]
17 Hb_001054_100 0.1937620475 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
18 Hb_000096_130 0.1952786361 - - hypothetical protein 23 [Hevea brasiliensis]
19 Hb_009687_010 0.1983290754 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X4 [Jatropha curcas]
20 Hb_000031_260 0.1985064129 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]

Gene co-expression network

sample Hb_007432_020 Hb_007432_020 Hb_004931_100 Hb_004931_100 Hb_007432_020--Hb_004931_100 Hb_004128_110 Hb_004128_110 Hb_007432_020--Hb_004128_110 Hb_000317_400 Hb_000317_400 Hb_007432_020--Hb_000317_400 Hb_000692_010 Hb_000692_010 Hb_007432_020--Hb_000692_010 Hb_105602_010 Hb_105602_010 Hb_007432_020--Hb_105602_010 Hb_002217_230 Hb_002217_230 Hb_007432_020--Hb_002217_230 Hb_005656_100 Hb_005656_100 Hb_004931_100--Hb_005656_100 Hb_002374_400 Hb_002374_400 Hb_004931_100--Hb_002374_400 Hb_001005_080 Hb_001005_080 Hb_004931_100--Hb_001005_080 Hb_004931_100--Hb_002217_230 Hb_004931_100--Hb_004128_110 Hb_000707_020 Hb_000707_020 Hb_004931_100--Hb_000707_020 Hb_001054_100 Hb_001054_100 Hb_004128_110--Hb_001054_100 Hb_004128_110--Hb_002217_230 Hb_000318_100 Hb_000318_100 Hb_004128_110--Hb_000318_100 Hb_000590_100 Hb_000590_100 Hb_004128_110--Hb_000590_100 Hb_002849_200 Hb_002849_200 Hb_004128_110--Hb_002849_200 Hb_000329_250 Hb_000329_250 Hb_000317_400--Hb_000329_250 Hb_000923_050 Hb_000923_050 Hb_000317_400--Hb_000923_050 Hb_001136_010 Hb_001136_010 Hb_000317_400--Hb_001136_010 Hb_000742_110 Hb_000742_110 Hb_000317_400--Hb_000742_110 Hb_001824_010 Hb_001824_010 Hb_000317_400--Hb_001824_010 Hb_001277_320 Hb_001277_320 Hb_000317_400--Hb_001277_320 Hb_000836_140 Hb_000836_140 Hb_000692_010--Hb_000836_140 Hb_000692_010--Hb_004128_110 Hb_000506_120 Hb_000506_120 Hb_000692_010--Hb_000506_120 Hb_000031_260 Hb_000031_260 Hb_000692_010--Hb_000031_260 Hb_000692_010--Hb_004931_100 Hb_009687_010 Hb_009687_010 Hb_105602_010--Hb_009687_010 Hb_004064_010 Hb_004064_010 Hb_105602_010--Hb_004064_010 Hb_000621_020 Hb_000621_020 Hb_105602_010--Hb_000621_020 Hb_003266_100 Hb_003266_100 Hb_105602_010--Hb_003266_100 Hb_001332_040 Hb_001332_040 Hb_105602_010--Hb_001332_040 Hb_000103_270 Hb_000103_270 Hb_105602_010--Hb_000103_270 Hb_032208_060 Hb_032208_060 Hb_002217_230--Hb_032208_060 Hb_004672_010 Hb_004672_010 Hb_002217_230--Hb_004672_010 Hb_001638_230 Hb_001638_230 Hb_002217_230--Hb_001638_230 Hb_000896_040 Hb_000896_040 Hb_002217_230--Hb_000896_040 Hb_005285_030 Hb_005285_030 Hb_002217_230--Hb_005285_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.6491 28.6857 33.6365 77.4214 22.649 32.884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
267.283 192.801 97.7945 271.39 15.7038

CAGE analysis