Hb_000031_260

Information

Type -
Description -
Location Contig31: 205464-208754
Sequence    

Annotation

kegg
ID pop:POPTR_0018s03360g
description POPTRDRAFT_737483; hypothetical protein
nr
ID XP_002324378.2
description hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
swissprot
ID Q54YK1
description Putative UDP-sugar transporter DDB_G0278631 OS=Dictyostelium discoideum GN=DDB_G0278631 PE=3 SV=2
trembl
ID B9ILD4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s03360g PE=4 SV=2
Gene Ontology
ID GO:0016020
description udp-sugar transporter ddb_g0278631

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000031_260 0.0 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
2 Hb_000286_060 0.1206020703 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
3 Hb_000345_250 0.120736752 - - cullin 1-like protein [Hevea brasiliensis]
4 Hb_000227_070 0.1261719482 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
5 Hb_001369_250 0.1269987753 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
6 Hb_010174_150 0.1287799477 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_003038_140 0.1389532283 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
8 Hb_000684_520 0.1407339564 - - glutathione S-transferase L3-like [Jatropha curcas]
9 Hb_001332_040 0.1415247716 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
10 Hb_000510_240 0.1418744822 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]
11 Hb_000723_170 0.1419301151 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
12 Hb_000012_410 0.1449566936 - - PREDICTED: histone deacetylase 2 isoform X1 [Jatropha curcas]
13 Hb_104265_040 0.1482772572 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004453_080 0.1483746178 - - PREDICTED: acyl-protein thioesterase 2-like [Populus euphratica]
15 Hb_028487_170 0.1498823318 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
16 Hb_000210_120 0.1508425259 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
17 Hb_000103_270 0.1521165636 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
18 Hb_010560_050 0.152731749 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
19 Hb_016522_010 0.1531612886 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
20 Hb_000187_040 0.1535208848 - - PREDICTED: pyridoxal kinase isoform X5 [Vitis vinifera]

Gene co-expression network

sample Hb_000031_260 Hb_000031_260 Hb_000286_060 Hb_000286_060 Hb_000031_260--Hb_000286_060 Hb_000345_250 Hb_000345_250 Hb_000031_260--Hb_000345_250 Hb_000227_070 Hb_000227_070 Hb_000031_260--Hb_000227_070 Hb_001369_250 Hb_001369_250 Hb_000031_260--Hb_001369_250 Hb_010174_150 Hb_010174_150 Hb_000031_260--Hb_010174_150 Hb_003038_140 Hb_003038_140 Hb_000031_260--Hb_003038_140 Hb_010560_050 Hb_010560_050 Hb_000286_060--Hb_010560_050 Hb_001085_240 Hb_001085_240 Hb_000286_060--Hb_001085_240 Hb_001332_040 Hb_001332_040 Hb_000286_060--Hb_001332_040 Hb_000286_060--Hb_000227_070 Hb_003633_050 Hb_003633_050 Hb_000286_060--Hb_003633_050 Hb_000096_160 Hb_000096_160 Hb_000286_060--Hb_000096_160 Hb_000345_250--Hb_000286_060 Hb_028487_170 Hb_028487_170 Hb_000345_250--Hb_028487_170 Hb_003291_020 Hb_003291_020 Hb_000345_250--Hb_003291_020 Hb_000700_040 Hb_000700_040 Hb_000345_250--Hb_000700_040 Hb_000685_050 Hb_000685_050 Hb_000345_250--Hb_000685_050 Hb_000510_240 Hb_000510_240 Hb_000227_070--Hb_000510_240 Hb_016522_010 Hb_016522_010 Hb_000227_070--Hb_016522_010 Hb_000227_070--Hb_010174_150 Hb_000227_070--Hb_001085_240 Hb_000227_070--Hb_000096_160 Hb_179924_010 Hb_179924_010 Hb_000227_070--Hb_179924_010 Hb_002675_140 Hb_002675_140 Hb_001369_250--Hb_002675_140 Hb_001369_250--Hb_010174_150 Hb_000555_100 Hb_000555_100 Hb_001369_250--Hb_000555_100 Hb_001369_250--Hb_010560_050 Hb_002357_060 Hb_002357_060 Hb_001369_250--Hb_002357_060 Hb_000665_050 Hb_000665_050 Hb_001369_250--Hb_000665_050 Hb_010174_150--Hb_002357_060 Hb_000347_450 Hb_000347_450 Hb_010174_150--Hb_000347_450 Hb_000012_410 Hb_000012_410 Hb_010174_150--Hb_000012_410 Hb_000210_120 Hb_000210_120 Hb_010174_150--Hb_000210_120 Hb_003038_140--Hb_001369_250 Hb_001726_110 Hb_001726_110 Hb_003038_140--Hb_001726_110 Hb_001623_160 Hb_001623_160 Hb_003038_140--Hb_001623_160 Hb_003038_140--Hb_001332_040 Hb_003038_140--Hb_002675_140 Hb_003038_140--Hb_010174_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.247835 0.478942 0.460386 1.44538 0.203059 0.385722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.79636 1.68406 0.588635 2.37623 0.870839

CAGE analysis