Hb_084886_010

Information

Type -
Description -
Location Contig84886: 1-1851
Sequence    

Annotation

kegg
ID rcu:RCOM_1506880
description hypothetical protein
nr
ID XP_002511223.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAJ8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1506880 PE=4 SV=1
Gene Ontology
ID GO:0007126
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_084886_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003040_030 0.1385753552 - - PREDICTED: NADP-dependent malic enzyme isoform X1 [Jatropha curcas]
3 Hb_002411_050 0.1647968972 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
4 Hb_005098_030 0.1652001935 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
5 Hb_000258_330 0.1858658195 - - Ran GTPase binding protein, putative [Ricinus communis]
6 Hb_004679_050 0.1876323035 - - galactono-1,4-lactone dehydrogenase, putative [Ricinus communis]
7 Hb_002600_040 0.1902056721 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
8 Hb_056753_010 0.1994026022 - - PREDICTED: L-galactono-1,4-lactone dehydrogenase, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_002473_110 0.1995150066 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase putative 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
10 Hb_000731_260 0.2008084927 - - hypothetical protein RCOM_0905090 [Ricinus communis]
11 Hb_010174_060 0.2025351827 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
12 Hb_000934_190 0.2038046438 - - SER/ARG-rich protein 34A [Theobroma cacao]
13 Hb_001357_120 0.2040780227 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
14 Hb_001059_170 0.2050367193 - - hexose transporter 1 [Hevea brasiliensis]
15 Hb_005285_030 0.2051034943 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
16 Hb_011671_450 0.2063790382 - - -
17 Hb_003090_110 0.21393293 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000069_600 0.2157045172 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
19 Hb_000174_210 0.2167854137 - - latex cyanogenic beta glucosidase [Hevea brasiliensis]
20 Hb_000260_810 0.2183472995 - - -

Gene co-expression network

sample Hb_084886_010 Hb_084886_010 Hb_003040_030 Hb_003040_030 Hb_084886_010--Hb_003040_030 Hb_002411_050 Hb_002411_050 Hb_084886_010--Hb_002411_050 Hb_005098_030 Hb_005098_030 Hb_084886_010--Hb_005098_030 Hb_000258_330 Hb_000258_330 Hb_084886_010--Hb_000258_330 Hb_004679_050 Hb_004679_050 Hb_084886_010--Hb_004679_050 Hb_002600_040 Hb_002600_040 Hb_084886_010--Hb_002600_040 Hb_046823_010 Hb_046823_010 Hb_003040_030--Hb_046823_010 Hb_000252_110 Hb_000252_110 Hb_003040_030--Hb_000252_110 Hb_004032_120 Hb_004032_120 Hb_003040_030--Hb_004032_120 Hb_003207_010 Hb_003207_010 Hb_003040_030--Hb_003207_010 Hb_003040_030--Hb_005098_030 Hb_056753_010 Hb_056753_010 Hb_002411_050--Hb_056753_010 Hb_000977_110 Hb_000977_110 Hb_002411_050--Hb_000977_110 Hb_002411_050--Hb_004679_050 Hb_001486_180 Hb_001486_180 Hb_002411_050--Hb_001486_180 Hb_029584_050 Hb_029584_050 Hb_002411_050--Hb_029584_050 Hb_008616_070 Hb_008616_070 Hb_002411_050--Hb_008616_070 Hb_000934_190 Hb_000934_190 Hb_005098_030--Hb_000934_190 Hb_005098_030--Hb_004679_050 Hb_011671_450 Hb_011671_450 Hb_005098_030--Hb_011671_450 Hb_002119_130 Hb_002119_130 Hb_005098_030--Hb_002119_130 Hb_017131_010 Hb_017131_010 Hb_005098_030--Hb_017131_010 Hb_003622_040 Hb_003622_040 Hb_005098_030--Hb_003622_040 Hb_004225_080 Hb_004225_080 Hb_000258_330--Hb_004225_080 Hb_000046_100 Hb_000046_100 Hb_000258_330--Hb_000046_100 Hb_003582_040 Hb_003582_040 Hb_000258_330--Hb_003582_040 Hb_001080_280 Hb_001080_280 Hb_000258_330--Hb_001080_280 Hb_009510_020 Hb_009510_020 Hb_000258_330--Hb_009510_020 Hb_001279_340 Hb_001279_340 Hb_000258_330--Hb_001279_340 Hb_004679_050--Hb_056753_010 Hb_000731_260 Hb_000731_260 Hb_004679_050--Hb_000731_260 Hb_004679_050--Hb_008616_070 Hb_004679_050--Hb_011671_450 Hb_002799_040 Hb_002799_040 Hb_004679_050--Hb_002799_040 Hb_093458_050 Hb_093458_050 Hb_002600_040--Hb_093458_050 Hb_000922_390 Hb_000922_390 Hb_002600_040--Hb_000922_390 Hb_012291_030 Hb_012291_030 Hb_002600_040--Hb_012291_030 Hb_002660_070 Hb_002660_070 Hb_002600_040--Hb_002660_070 Hb_001519_030 Hb_001519_030 Hb_002600_040--Hb_001519_030 Hb_011953_020 Hb_011953_020 Hb_002600_040--Hb_011953_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.353018 0.133039 0.259458 0.369425 0.0979166 0.0749017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.17782 0.231559 1.01422 0.822056 0.375462

CAGE analysis