Hb_002936_080

Information

Type -
Description -
Location Contig2936: 73317-77225
Sequence    

Annotation

kegg
ID rcu:RCOM_0700910
description Protein bem46, putative
nr
ID XP_002523513.1
description Protein bem46, putative [Ricinus communis]
swissprot
ID Q5ZJ01
description Alpha/beta hydrolase domain-containing protein 17B OS=Gallus gallus GN=ABHD17B PE=2 SV=1
trembl
ID B9SBZ4
description Protein bem46, putative OS=Ricinus communis GN=RCOM_0700910 PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta hydrolase domain-containing protein 17b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002936_080 0.0 - - Protein bem46, putative [Ricinus communis]
2 Hb_004162_260 0.1482675411 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
3 Hb_000530_120 0.1648568379 - - copper transport protein ATOX1 [Hevea brasiliensis]
4 Hb_004672_030 0.1806605064 - - proline oxidase [Manihot esculenta]
5 Hb_001045_040 0.1831562389 - - PREDICTED: carbonyl reductase [NADPH] 2 [Jatropha curcas]
6 Hb_002609_040 0.1844529571 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
7 Hb_001823_060 0.1947300321 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
8 Hb_000429_090 0.1973121419 - - PREDICTED: carboxyl-terminal-processing peptidase 3, chloroplastic [Jatropha curcas]
9 Hb_000928_130 0.2066861849 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_000178_120 0.2071922211 - - PREDICTED: histone H2B [Jatropha curcas]
11 Hb_000318_160 0.2102166834 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
12 Hb_000310_070 0.2112404736 - - BnaA06g08330D [Brassica napus]
13 Hb_000705_290 0.2126930076 - - C-4 methyl sterol oxidase, putative [Ricinus communis]
14 Hb_000679_220 0.2129386976 - - PREDICTED: uncharacterized protein LOC105637638 [Jatropha curcas]
15 Hb_002260_030 0.2142908877 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
16 Hb_002802_020 0.2149728352 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
17 Hb_011379_010 0.2157987578 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
18 Hb_000445_490 0.2188556846 - - -
19 Hb_010402_050 0.2215767159 - - -
20 Hb_000170_120 0.2230934414 - - ATP binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002936_080 Hb_002936_080 Hb_004162_260 Hb_004162_260 Hb_002936_080--Hb_004162_260 Hb_000530_120 Hb_000530_120 Hb_002936_080--Hb_000530_120 Hb_004672_030 Hb_004672_030 Hb_002936_080--Hb_004672_030 Hb_001045_040 Hb_001045_040 Hb_002936_080--Hb_001045_040 Hb_002609_040 Hb_002609_040 Hb_002936_080--Hb_002609_040 Hb_001823_060 Hb_001823_060 Hb_002936_080--Hb_001823_060 Hb_014834_010 Hb_014834_010 Hb_004162_260--Hb_014834_010 Hb_002260_030 Hb_002260_030 Hb_004162_260--Hb_002260_030 Hb_007520_010 Hb_007520_010 Hb_004162_260--Hb_007520_010 Hb_000914_170 Hb_000914_170 Hb_004162_260--Hb_000914_170 Hb_000935_030 Hb_000935_030 Hb_004162_260--Hb_000935_030 Hb_003849_270 Hb_003849_270 Hb_000530_120--Hb_003849_270 Hb_000318_160 Hb_000318_160 Hb_000530_120--Hb_000318_160 Hb_000445_490 Hb_000445_490 Hb_000530_120--Hb_000445_490 Hb_010402_050 Hb_010402_050 Hb_000530_120--Hb_010402_050 Hb_003050_280 Hb_003050_280 Hb_000530_120--Hb_003050_280 Hb_000270_610 Hb_000270_610 Hb_000530_120--Hb_000270_610 Hb_004128_070 Hb_004128_070 Hb_004672_030--Hb_004128_070 Hb_000525_050 Hb_000525_050 Hb_004672_030--Hb_000525_050 Hb_005846_030 Hb_005846_030 Hb_004672_030--Hb_005846_030 Hb_065525_120 Hb_065525_120 Hb_004672_030--Hb_065525_120 Hb_004346_030 Hb_004346_030 Hb_004672_030--Hb_004346_030 Hb_000329_550 Hb_000329_550 Hb_001045_040--Hb_000329_550 Hb_008948_100 Hb_008948_100 Hb_001045_040--Hb_008948_100 Hb_000676_340 Hb_000676_340 Hb_001045_040--Hb_000676_340 Hb_001252_220 Hb_001252_220 Hb_001045_040--Hb_001252_220 Hb_003462_160 Hb_003462_160 Hb_001045_040--Hb_003462_160 Hb_001097_090 Hb_001097_090 Hb_002609_040--Hb_001097_090 Hb_000436_030 Hb_000436_030 Hb_002609_040--Hb_000436_030 Hb_019113_020 Hb_019113_020 Hb_002609_040--Hb_019113_020 Hb_000320_330 Hb_000320_330 Hb_002609_040--Hb_000320_330 Hb_002609_040--Hb_010402_050 Hb_011021_040 Hb_011021_040 Hb_002609_040--Hb_011021_040 Hb_000056_070 Hb_000056_070 Hb_001823_060--Hb_000056_070 Hb_003349_030 Hb_003349_030 Hb_001823_060--Hb_003349_030 Hb_019762_050 Hb_019762_050 Hb_001823_060--Hb_019762_050 Hb_000005_300 Hb_000005_300 Hb_001823_060--Hb_000005_300 Hb_017845_010 Hb_017845_010 Hb_001823_060--Hb_017845_010 Hb_001823_060--Hb_001252_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.646009 0.205598 1.22701 1.61362 0.137117 0.0717914
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.9561 3.65068 2.90644 0.0840219 2.69734

CAGE analysis