Hb_000676_340

Information

Type -
Description -
Location Contig676: 275924-277213
Sequence    

Annotation

kegg
ID rcu:RCOM_0779050
description serine-threonine protein kinase, plant-type, putative
nr
ID XP_002533302.1
description serine-threonine protein kinase, plant-type, putative [Ricinus communis]
swissprot
ID Q9M9S4
description Probable LRR receptor-like serine/threonine-protein kinase At1g14390 OS=Arabidopsis thaliana GN=At1g14390 PE=2 SV=1
trembl
ID B9T4Y3
description Serine-threonine protein kinase, plant-type, putative OS=Ricinus communis GN=RCOM_0779050 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at4g36180

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000676_340 0.0 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
2 Hb_006018_060 0.1630490536 - - Zinc finger SWIM domain-containing protein 7 isoform 1 [Theobroma cacao]
3 Hb_002774_050 0.1681197751 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
4 Hb_002260_030 0.1781274313 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
5 Hb_003581_300 0.1801165843 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
6 Hb_001123_210 0.1850715814 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
7 Hb_000178_120 0.1871740237 - - PREDICTED: histone H2B [Jatropha curcas]
8 Hb_008948_100 0.1929041763 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
9 Hb_002157_040 0.1979578729 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
10 Hb_001045_040 0.2015237673 - - PREDICTED: carbonyl reductase [NADPH] 2 [Jatropha curcas]
11 Hb_000072_210 0.2039603142 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
12 Hb_158092_010 0.2049411774 - - CYP51 [Hevea brasiliensis]
13 Hb_014834_010 0.2056141765 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT4 [Jatropha curcas]
14 Hb_015430_010 0.2083371881 - - PREDICTED: uncharacterized protein LOC105125506 isoform X2 [Populus euphratica]
15 Hb_000914_170 0.2097886153 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
16 Hb_001959_130 0.2101206936 - - transporter, putative [Ricinus communis]
17 Hb_000483_480 0.2185233245 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000031_080 0.2205884194 - - PREDICTED: uncharacterized protein LOC105637482 [Jatropha curcas]
19 Hb_050806_010 0.2214606401 - - PREDICTED: ubiquitin-conjugating enzyme E2-17 kDa [Jatropha curcas]
20 Hb_001348_120 0.2272753501 - - Phloem protein 2-B10, putative [Theobroma cacao]

Gene co-expression network

sample Hb_000676_340 Hb_000676_340 Hb_006018_060 Hb_006018_060 Hb_000676_340--Hb_006018_060 Hb_002774_050 Hb_002774_050 Hb_000676_340--Hb_002774_050 Hb_002260_030 Hb_002260_030 Hb_000676_340--Hb_002260_030 Hb_003581_300 Hb_003581_300 Hb_000676_340--Hb_003581_300 Hb_001123_210 Hb_001123_210 Hb_000676_340--Hb_001123_210 Hb_000178_120 Hb_000178_120 Hb_000676_340--Hb_000178_120 Hb_006018_060--Hb_003581_300 Hb_002157_040 Hb_002157_040 Hb_006018_060--Hb_002157_040 Hb_015430_010 Hb_015430_010 Hb_006018_060--Hb_015430_010 Hb_006018_060--Hb_000178_120 Hb_006018_060--Hb_002260_030 Hb_050806_010 Hb_050806_010 Hb_002774_050--Hb_050806_010 Hb_007192_100 Hb_007192_100 Hb_002774_050--Hb_007192_100 Hb_001314_040 Hb_001314_040 Hb_002774_050--Hb_001314_040 Hb_002774_050--Hb_000178_120 Hb_001357_120 Hb_001357_120 Hb_002774_050--Hb_001357_120 Hb_010402_050 Hb_010402_050 Hb_002774_050--Hb_010402_050 Hb_002260_030--Hb_001357_120 Hb_002260_030--Hb_002774_050 Hb_000914_170 Hb_000914_170 Hb_002260_030--Hb_000914_170 Hb_008948_100 Hb_008948_100 Hb_002260_030--Hb_008948_100 Hb_000175_030 Hb_000175_030 Hb_002260_030--Hb_000175_030 Hb_000705_290 Hb_000705_290 Hb_002260_030--Hb_000705_290 Hb_003581_300--Hb_015430_010 Hb_054074_010 Hb_054074_010 Hb_003581_300--Hb_054074_010 Hb_003581_300--Hb_002260_030 Hb_003581_300--Hb_002157_040 Hb_000030_200 Hb_000030_200 Hb_003581_300--Hb_000030_200 Hb_010897_030 Hb_010897_030 Hb_001123_210--Hb_010897_030 Hb_002341_020 Hb_002341_020 Hb_001123_210--Hb_002341_020 Hb_001123_210--Hb_002774_050 Hb_000072_210 Hb_000072_210 Hb_001123_210--Hb_000072_210 Hb_001123_210--Hb_007192_100 Hb_004052_050 Hb_004052_050 Hb_001123_210--Hb_004052_050 Hb_023344_050 Hb_023344_050 Hb_000178_120--Hb_023344_050 Hb_007441_260 Hb_007441_260 Hb_000178_120--Hb_007441_260 Hb_000178_120--Hb_010402_050 Hb_002042_080 Hb_002042_080 Hb_000178_120--Hb_002042_080 Hb_002243_060 Hb_002243_060 Hb_000178_120--Hb_002243_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.741309 2.03264 2.37177 4.96638 0.153905 0.127144
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1368 5.27163 6.39688 1.30059 1.58196

CAGE analysis