Hb_006018_060

Information

Type -
Description -
Location Contig6018: 153256-154952
Sequence    

Annotation

kegg
ID tcc:TCM_007185
description Zinc finger SWIM domain-containing protein 7 isoform 1
nr
ID XP_007042588.1
description Zinc finger SWIM domain-containing protein 7 isoform 1 [Theobroma cacao]
swissprot
ID Q19AV6
description Zinc finger SWIM domain-containing protein 7 OS=Homo sapiens GN=ZSWIM7 PE=1 SV=1
trembl
ID A0A061E048
description Zinc finger SWIM domain-containing protein 7 isoform 1 OS=Theobroma cacao GN=TCM_007185 PE=4 SV=1
Gene Ontology
ID GO:0005634
description zinc finger swim domain-containing protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_50599: 149683-152976 , PASA_asmbl_50600: 153336-154573 , PASA_asmbl_50601: 153350-154891
cDNA
(Sanger)
(ID:Location)		 018_D10.ab1: 153341-154505

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006018_060 0.0 - - Zinc finger SWIM domain-containing protein 7 isoform 1 [Theobroma cacao]
2 Hb_003581_300 0.1155825577 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
3 Hb_002157_040 0.1319190455 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
4 Hb_015430_010 0.1603830261 - - PREDICTED: uncharacterized protein LOC105125506 isoform X2 [Populus euphratica]
5 Hb_000676_340 0.1630490536 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000178_120 0.165331295 - - PREDICTED: histone H2B [Jatropha curcas]
7 Hb_002260_030 0.1672912791 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
8 Hb_158092_010 0.1893535405 - - CYP51 [Hevea brasiliensis]
9 Hb_002774_050 0.1915012481 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
10 Hb_003291_020 0.1916756506 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
11 Hb_007441_260 0.1935808794 - - PREDICTED: ATP synthase subunit delta', mitochondrial-like [Jatropha curcas]
12 Hb_003502_070 0.1966508811 - - hypothetical protein CISIN_1g0405401mg, partial [Citrus sinensis]
13 Hb_000072_210 0.1967456766 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
14 Hb_000382_020 0.1981374577 - - PREDICTED: uncharacterized protein LOC105633610 [Jatropha curcas]
15 Hb_006573_290 0.1998610476 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
16 Hb_000030_200 0.2024936731 - - PREDICTED: early nodulin-93-like [Populus euphratica]
17 Hb_001114_080 0.2026188264 - - hypothetical protein PRUPE_ppa019021mg, partial [Prunus persica]
18 Hb_000345_250 0.2031024569 - - cullin 1-like protein [Hevea brasiliensis]
19 Hb_000096_150 0.2031196724 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
20 Hb_010560_030 0.2032293838 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_006018_060 Hb_006018_060 Hb_003581_300 Hb_003581_300 Hb_006018_060--Hb_003581_300 Hb_002157_040 Hb_002157_040 Hb_006018_060--Hb_002157_040 Hb_015430_010 Hb_015430_010 Hb_006018_060--Hb_015430_010 Hb_000676_340 Hb_000676_340 Hb_006018_060--Hb_000676_340 Hb_000178_120 Hb_000178_120 Hb_006018_060--Hb_000178_120 Hb_002260_030 Hb_002260_030 Hb_006018_060--Hb_002260_030 Hb_003581_300--Hb_015430_010 Hb_054074_010 Hb_054074_010 Hb_003581_300--Hb_054074_010 Hb_003581_300--Hb_002260_030 Hb_003581_300--Hb_002157_040 Hb_000030_200 Hb_000030_200 Hb_003581_300--Hb_000030_200 Hb_111985_110 Hb_111985_110 Hb_002157_040--Hb_111985_110 Hb_006573_290 Hb_006573_290 Hb_002157_040--Hb_006573_290 Hb_021409_080 Hb_021409_080 Hb_002157_040--Hb_021409_080 Hb_001019_150 Hb_001019_150 Hb_002157_040--Hb_001019_150 Hb_001105_090 Hb_001105_090 Hb_015430_010--Hb_001105_090 Hb_015430_010--Hb_000178_120 Hb_002042_080 Hb_002042_080 Hb_015430_010--Hb_002042_080 Hb_009778_040 Hb_009778_040 Hb_015430_010--Hb_009778_040 Hb_002774_050 Hb_002774_050 Hb_000676_340--Hb_002774_050 Hb_000676_340--Hb_002260_030 Hb_000676_340--Hb_003581_300 Hb_001123_210 Hb_001123_210 Hb_000676_340--Hb_001123_210 Hb_000676_340--Hb_000178_120 Hb_023344_050 Hb_023344_050 Hb_000178_120--Hb_023344_050 Hb_007441_260 Hb_007441_260 Hb_000178_120--Hb_007441_260 Hb_000178_120--Hb_002774_050 Hb_010402_050 Hb_010402_050 Hb_000178_120--Hb_010402_050 Hb_000178_120--Hb_002042_080 Hb_002243_060 Hb_002243_060 Hb_000178_120--Hb_002243_060 Hb_001357_120 Hb_001357_120 Hb_002260_030--Hb_001357_120 Hb_002260_030--Hb_002774_050 Hb_000914_170 Hb_000914_170 Hb_002260_030--Hb_000914_170 Hb_008948_100 Hb_008948_100 Hb_002260_030--Hb_008948_100 Hb_000175_030 Hb_000175_030 Hb_002260_030--Hb_000175_030 Hb_000705_290 Hb_000705_290 Hb_002260_030--Hb_000705_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.554967 0.259901 1.91341 3.48214 0.0709235 0.183864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.3866 3.73361 3.33396 2.09602 1.44526

CAGE analysis