Hb_002157_040

Information

Type -
Description -
Location Contig2157: 22449-25879
Sequence    

Annotation

kegg
ID rcu:RCOM_1183370
description hypothetical protein
nr
ID XP_012065648.1
description PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LHD5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16906 PE=4 SV=1
Gene Ontology
ID GO:0005886
description late embryogenesis abundant hydroxyproline-rich glycoprotein family isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22286: 22458-25767
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002157_040 0.0 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
2 Hb_006018_060 0.1319190455 - - Zinc finger SWIM domain-containing protein 7 isoform 1 [Theobroma cacao]
3 Hb_111985_110 0.1320153423 - - thioredoxin H-type 3 [Hevea brasiliensis]
4 Hb_006573_290 0.137626966 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
5 Hb_021409_080 0.1524598434 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
6 Hb_001019_150 0.1664813818 - - Acyl-protein thioesterase, putative [Ricinus communis]
7 Hb_003581_300 0.1666701123 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
8 Hb_000428_060 0.17555338 - - malate dehydrogenase, putative [Ricinus communis]
9 Hb_025466_020 0.1767614432 - - tubulin beta-6 [Brassica oleracea var. italica]
10 Hb_003126_130 0.1776427779 - - inositol-1-monophosphatase family protein [Populus trichocarpa]
11 Hb_000072_210 0.1820402023 - - PREDICTED: pentatricopeptide repeat-containing protein At5g38730 [Jatropha curcas]
12 Hb_003502_070 0.1829854397 - - hypothetical protein CISIN_1g0405401mg, partial [Citrus sinensis]
13 Hb_001153_120 0.1834812945 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
14 Hb_000407_070 0.1902018007 - - PREDICTED: probable tyrosine-protein phosphatase At1g05000 isoform X1 [Jatropha curcas]
15 Hb_002260_030 0.1906207812 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
16 Hb_000417_100 0.1909869604 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 12-like [Jatropha curcas]
17 Hb_000590_120 0.1910035609 - - dehydroascorbate reductase, putative [Ricinus communis]
18 Hb_010560_030 0.1916127202 - - PREDICTED: mitochondrial pyruvate carrier 4-like [Jatropha curcas]
19 Hb_180343_010 0.1916428079 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
20 Hb_003291_020 0.1927060117 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_002157_040 Hb_002157_040 Hb_006018_060 Hb_006018_060 Hb_002157_040--Hb_006018_060 Hb_111985_110 Hb_111985_110 Hb_002157_040--Hb_111985_110 Hb_006573_290 Hb_006573_290 Hb_002157_040--Hb_006573_290 Hb_021409_080 Hb_021409_080 Hb_002157_040--Hb_021409_080 Hb_001019_150 Hb_001019_150 Hb_002157_040--Hb_001019_150 Hb_003581_300 Hb_003581_300 Hb_002157_040--Hb_003581_300 Hb_006018_060--Hb_003581_300 Hb_015430_010 Hb_015430_010 Hb_006018_060--Hb_015430_010 Hb_000676_340 Hb_000676_340 Hb_006018_060--Hb_000676_340 Hb_000178_120 Hb_000178_120 Hb_006018_060--Hb_000178_120 Hb_002260_030 Hb_002260_030 Hb_006018_060--Hb_002260_030 Hb_111985_110--Hb_021409_080 Hb_000417_100 Hb_000417_100 Hb_111985_110--Hb_000417_100 Hb_000407_070 Hb_000407_070 Hb_111985_110--Hb_000407_070 Hb_004627_030 Hb_004627_030 Hb_111985_110--Hb_004627_030 Hb_012305_130 Hb_012305_130 Hb_111985_110--Hb_012305_130 Hb_111985_110--Hb_006573_290 Hb_000649_140 Hb_000649_140 Hb_006573_290--Hb_000649_140 Hb_148209_010 Hb_148209_010 Hb_006573_290--Hb_148209_010 Hb_006573_290--Hb_021409_080 Hb_002154_110 Hb_002154_110 Hb_006573_290--Hb_002154_110 Hb_000428_060 Hb_000428_060 Hb_006573_290--Hb_000428_060 Hb_000946_100 Hb_000946_100 Hb_006573_290--Hb_000946_100 Hb_021409_080--Hb_012305_130 Hb_021409_080--Hb_004627_030 Hb_180343_010 Hb_180343_010 Hb_021409_080--Hb_180343_010 Hb_002110_100 Hb_002110_100 Hb_021409_080--Hb_002110_100 Hb_000110_120 Hb_000110_120 Hb_021409_080--Hb_000110_120 Hb_003106_100 Hb_003106_100 Hb_001019_150--Hb_003106_100 Hb_002876_020 Hb_002876_020 Hb_001019_150--Hb_002876_020 Hb_000056_070 Hb_000056_070 Hb_001019_150--Hb_000056_070 Hb_007827_010 Hb_007827_010 Hb_001019_150--Hb_007827_010 Hb_001329_150 Hb_001329_150 Hb_001019_150--Hb_001329_150 Hb_001353_010 Hb_001353_010 Hb_001019_150--Hb_001353_010 Hb_003581_300--Hb_015430_010 Hb_054074_010 Hb_054074_010 Hb_003581_300--Hb_054074_010 Hb_003581_300--Hb_002260_030 Hb_000030_200 Hb_000030_200 Hb_003581_300--Hb_000030_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.06527 0.936189 3.12528 8.11706 0.470858 0.513736
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1737 4.91767 3.61477 2.69416 3.89068

CAGE analysis