Hb_007520_010

Information

Type -
Description -
Location Contig7520: 21172-22038
Sequence    

Annotation

kegg
ID vvi:100243388
description uncharacterized LOC100243388
nr
ID XP_012080066.1
description PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KGY6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11475 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007520_010 0.0 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
2 Hb_000258_100 0.1342140898 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000169_140 0.149121753 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
4 Hb_003336_030 0.1561266227 - - transcription factor, putative [Ricinus communis]
5 Hb_004108_090 0.1843996529 - - PREDICTED: uncharacterized protein LOC105650231 [Jatropha curcas]
6 Hb_004162_260 0.1845062555 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
7 Hb_010582_010 0.2041673303 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]
8 Hb_000429_090 0.205476729 - - PREDICTED: carboxyl-terminal-processing peptidase 3, chloroplastic [Jatropha curcas]
9 Hb_091194_010 0.2059798473 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
10 Hb_000429_100 0.2077546818 - - hypothetical protein POPTR_0006s05430g [Populus trichocarpa]
11 Hb_000530_120 0.2095250147 - - copper transport protein ATOX1 [Hevea brasiliensis]
12 Hb_000529_220 0.2107707387 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002260_030 0.2109881189 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
14 Hb_001579_240 0.2138041524 - - galactinol synthase [Manihot esculenta]
15 Hb_000575_020 0.2195727073 - - PREDICTED: copper-transporting ATPase PAA1, chloroplastic [Jatropha curcas]
16 Hb_000320_180 0.2202087923 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
17 Hb_025964_050 0.2209781436 - - PREDICTED: neural Wiskott-Aldrich syndrome protein [Jatropha curcas]
18 Hb_107504_010 0.2223562705 - - -
19 Hb_001136_060 0.2224194013 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
20 Hb_004965_070 0.2237797404 - - PREDICTED: UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Jatropha curcas]

Gene co-expression network

sample Hb_007520_010 Hb_007520_010 Hb_000258_100 Hb_000258_100 Hb_007520_010--Hb_000258_100 Hb_000169_140 Hb_000169_140 Hb_007520_010--Hb_000169_140 Hb_003336_030 Hb_003336_030 Hb_007520_010--Hb_003336_030 Hb_004108_090 Hb_004108_090 Hb_007520_010--Hb_004108_090 Hb_004162_260 Hb_004162_260 Hb_007520_010--Hb_004162_260 Hb_010582_010 Hb_010582_010 Hb_007520_010--Hb_010582_010 Hb_101133_020 Hb_101133_020 Hb_000258_100--Hb_101133_020 Hb_107504_010 Hb_107504_010 Hb_000258_100--Hb_107504_010 Hb_104010_010 Hb_104010_010 Hb_000258_100--Hb_104010_010 Hb_000258_100--Hb_004108_090 Hb_000258_100--Hb_000169_140 Hb_000210_220 Hb_000210_220 Hb_000169_140--Hb_000210_220 Hb_003349_080 Hb_003349_080 Hb_000169_140--Hb_003349_080 Hb_000529_220 Hb_000529_220 Hb_000169_140--Hb_000529_220 Hb_000997_360 Hb_000997_360 Hb_000169_140--Hb_000997_360 Hb_028487_030 Hb_028487_030 Hb_000169_140--Hb_028487_030 Hb_002260_030 Hb_002260_030 Hb_000169_140--Hb_002260_030 Hb_138585_050 Hb_138585_050 Hb_003336_030--Hb_138585_050 Hb_000320_180 Hb_000320_180 Hb_003336_030--Hb_000320_180 Hb_024714_050 Hb_024714_050 Hb_003336_030--Hb_024714_050 Hb_003336_030--Hb_000210_220 Hb_000272_140 Hb_000272_140 Hb_003336_030--Hb_000272_140 Hb_003336_030--Hb_000169_140 Hb_000575_020 Hb_000575_020 Hb_004108_090--Hb_000575_020 Hb_001369_240 Hb_001369_240 Hb_004108_090--Hb_001369_240 Hb_011004_010 Hb_011004_010 Hb_004108_090--Hb_011004_010 Hb_004108_090--Hb_107504_010 Hb_001035_040 Hb_001035_040 Hb_004108_090--Hb_001035_040 Hb_002936_080 Hb_002936_080 Hb_004162_260--Hb_002936_080 Hb_014834_010 Hb_014834_010 Hb_004162_260--Hb_014834_010 Hb_004162_260--Hb_002260_030 Hb_000914_170 Hb_000914_170 Hb_004162_260--Hb_000914_170 Hb_000935_030 Hb_000935_030 Hb_004162_260--Hb_000935_030 Hb_001304_140 Hb_001304_140 Hb_010582_010--Hb_001304_140 Hb_000365_080 Hb_000365_080 Hb_010582_010--Hb_000365_080 Hb_054074_010 Hb_054074_010 Hb_010582_010--Hb_054074_010 Hb_005211_190 Hb_005211_190 Hb_010582_010--Hb_005211_190 Hb_002609_210 Hb_002609_210 Hb_010582_010--Hb_002609_210 Hb_001424_020 Hb_001424_020 Hb_010582_010--Hb_001424_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7229 1.26262 5.04693 10.7837 11.0886 6.94234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.9709 32.7648 25.4907 2.1403 34.6809

CAGE analysis