Hb_000258_100

Information

Type -
Description -
Location Contig258: 100313-102692
Sequence    

Annotation

kegg
ID rcu:RCOM_0836450
description hypothetical protein
nr
ID XP_002522439.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S8X0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0836450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007520_010 0.1342140898 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
3 Hb_101133_020 0.1973524333 - - PREDICTED: 15.7 kDa heat shock protein, peroxisomal [Jatropha curcas]
4 Hb_107504_010 0.2032378662 - - -
5 Hb_104010_010 0.2110921672 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
6 Hb_004108_090 0.2115115352 - - PREDICTED: uncharacterized protein LOC105650231 [Jatropha curcas]
7 Hb_000169_140 0.2153281768 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
8 Hb_003336_030 0.2205225492 - - transcription factor, putative [Ricinus communis]
9 Hb_162033_010 0.2224924622 - - -
10 Hb_010582_010 0.2267983838 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]
11 Hb_000429_090 0.2315177378 - - PREDICTED: carboxyl-terminal-processing peptidase 3, chloroplastic [Jatropha curcas]
12 Hb_001936_140 0.2366110963 - - PREDICTED: ATP-citrate synthase alpha chain protein 1 [Jatropha curcas]
13 Hb_008887_040 0.2371366226 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
14 Hb_000530_120 0.2391156064 - - copper transport protein ATOX1 [Hevea brasiliensis]
15 Hb_001304_140 0.2398134378 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
16 Hb_000453_300 0.2411184587 - - latex cystatin [Hevea brasiliensis]
17 Hb_002391_220 0.2450555585 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
18 Hb_000575_020 0.2473871893 - - PREDICTED: copper-transporting ATPase PAA1, chloroplastic [Jatropha curcas]
19 Hb_000270_610 0.2478297386 - - PREDICTED: uncharacterized protein At5g50100, mitochondrial [Jatropha curcas]
20 Hb_000069_140 0.2483775187 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]

Gene co-expression network

sample Hb_000258_100 Hb_000258_100 Hb_007520_010 Hb_007520_010 Hb_000258_100--Hb_007520_010 Hb_101133_020 Hb_101133_020 Hb_000258_100--Hb_101133_020 Hb_107504_010 Hb_107504_010 Hb_000258_100--Hb_107504_010 Hb_104010_010 Hb_104010_010 Hb_000258_100--Hb_104010_010 Hb_004108_090 Hb_004108_090 Hb_000258_100--Hb_004108_090 Hb_000169_140 Hb_000169_140 Hb_000258_100--Hb_000169_140 Hb_007520_010--Hb_000169_140 Hb_003336_030 Hb_003336_030 Hb_007520_010--Hb_003336_030 Hb_007520_010--Hb_004108_090 Hb_004162_260 Hb_004162_260 Hb_007520_010--Hb_004162_260 Hb_010582_010 Hb_010582_010 Hb_007520_010--Hb_010582_010 Hb_000365_080 Hb_000365_080 Hb_101133_020--Hb_000365_080 Hb_005211_190 Hb_005211_190 Hb_101133_020--Hb_005211_190 Hb_001424_020 Hb_001424_020 Hb_101133_020--Hb_001424_020 Hb_000320_180 Hb_000320_180 Hb_101133_020--Hb_000320_180 Hb_148909_020 Hb_148909_020 Hb_101133_020--Hb_148909_020 Hb_000159_070 Hb_000159_070 Hb_101133_020--Hb_000159_070 Hb_001936_140 Hb_001936_140 Hb_107504_010--Hb_001936_140 Hb_012799_020 Hb_012799_020 Hb_107504_010--Hb_012799_020 Hb_002918_040 Hb_002918_040 Hb_107504_010--Hb_002918_040 Hb_107504_010--Hb_004108_090 Hb_054074_010 Hb_054074_010 Hb_107504_010--Hb_054074_010 Hb_000453_300 Hb_000453_300 Hb_107504_010--Hb_000453_300 Hb_003050_070 Hb_003050_070 Hb_104010_010--Hb_003050_070 Hb_001741_090 Hb_001741_090 Hb_104010_010--Hb_001741_090 Hb_001507_070 Hb_001507_070 Hb_104010_010--Hb_001507_070 Hb_104010_010--Hb_000453_300 Hb_148121_010 Hb_148121_010 Hb_104010_010--Hb_148121_010 Hb_011004_010 Hb_011004_010 Hb_104010_010--Hb_011004_010 Hb_000575_020 Hb_000575_020 Hb_004108_090--Hb_000575_020 Hb_001369_240 Hb_001369_240 Hb_004108_090--Hb_001369_240 Hb_004108_090--Hb_011004_010 Hb_001035_040 Hb_001035_040 Hb_004108_090--Hb_001035_040 Hb_000210_220 Hb_000210_220 Hb_000169_140--Hb_000210_220 Hb_003349_080 Hb_003349_080 Hb_000169_140--Hb_003349_080 Hb_000529_220 Hb_000529_220 Hb_000169_140--Hb_000529_220 Hb_000997_360 Hb_000997_360 Hb_000169_140--Hb_000997_360 Hb_028487_030 Hb_028487_030 Hb_000169_140--Hb_028487_030 Hb_002260_030 Hb_002260_030 Hb_000169_140--Hb_002260_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0567586 0 0.0290686 0.0448468 0.0948557 0.0402322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.6919 0.374163 0.126197 0.0136399 0.210539

CAGE analysis