Hb_148909_020

Information

Type -
Description -
Location Contig148909: 28352-31527
Sequence    

Annotation

kegg
ID vvi:100249085
description glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial
nr
ID XP_012077343.1
description PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
swissprot
ID D7STK2
description Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Vitis vinifera GN=GATC PE=3 SV=1
trembl
ID A0A0B0P3Y3
description Glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial OS=Gossypium arboreum GN=GATC PE=3 SV=1
Gene Ontology
ID GO:0006450
description glutamyl-trna amidotransferase subunit chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12380: 28359-28582 , PASA_asmbl_12382: 32456-33724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148909_020 0.0 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
2 Hb_000483_250 0.1349485339 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
3 Hb_000159_070 0.1375705571 - - JHL03K20.4 [Jatropha curcas]
4 Hb_007290_080 0.1392548654 - - hypothetical protein CISIN_1g047098mg [Citrus sinensis]
5 Hb_008887_040 0.1401395608 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
6 Hb_060618_010 0.1470725223 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
7 Hb_000172_420 0.1490013843 - - 60S ribosomal protein L30, putative [Ricinus communis]
8 Hb_001434_070 0.1503337064 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
9 Hb_002248_100 0.1530176894 - - hypothetical protein VITISV_027197 [Vitis vinifera]
10 Hb_009384_020 0.1537687765 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
11 Hb_001304_140 0.1571372355 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
12 Hb_002897_080 0.1579388582 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
13 Hb_076693_040 0.1639088231 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
14 Hb_000191_030 0.1655451862 - - hypothetical protein POPTR_0012s07830g [Populus trichocarpa]
15 Hb_000599_280 0.1673749319 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
16 Hb_003988_040 0.1687484192 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
17 Hb_000329_020 0.1693380058 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
18 Hb_101133_020 0.1697137848 - - PREDICTED: 15.7 kDa heat shock protein, peroxisomal [Jatropha curcas]
19 Hb_000069_140 0.1713122874 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
20 Hb_007943_140 0.1726795881 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]

Gene co-expression network

sample Hb_148909_020 Hb_148909_020 Hb_000483_250 Hb_000483_250 Hb_148909_020--Hb_000483_250 Hb_000159_070 Hb_000159_070 Hb_148909_020--Hb_000159_070 Hb_007290_080 Hb_007290_080 Hb_148909_020--Hb_007290_080 Hb_008887_040 Hb_008887_040 Hb_148909_020--Hb_008887_040 Hb_060618_010 Hb_060618_010 Hb_148909_020--Hb_060618_010 Hb_000172_420 Hb_000172_420 Hb_148909_020--Hb_000172_420 Hb_005211_190 Hb_005211_190 Hb_000483_250--Hb_005211_190 Hb_002107_120 Hb_002107_120 Hb_000483_250--Hb_002107_120 Hb_000483_250--Hb_060618_010 Hb_000836_140 Hb_000836_140 Hb_000483_250--Hb_000836_140 Hb_001424_020 Hb_001424_020 Hb_000483_250--Hb_001424_020 Hb_000083_090 Hb_000083_090 Hb_000483_250--Hb_000083_090 Hb_009384_020 Hb_009384_020 Hb_000159_070--Hb_009384_020 Hb_076693_040 Hb_076693_040 Hb_000159_070--Hb_076693_040 Hb_003988_040 Hb_003988_040 Hb_000159_070--Hb_003988_040 Hb_019516_100 Hb_019516_100 Hb_000159_070--Hb_019516_100 Hb_000159_070--Hb_000172_420 Hb_002897_080 Hb_002897_080 Hb_000159_070--Hb_002897_080 Hb_001571_090 Hb_001571_090 Hb_007290_080--Hb_001571_090 Hb_010815_030 Hb_010815_030 Hb_007290_080--Hb_010815_030 Hb_000329_020 Hb_000329_020 Hb_007290_080--Hb_000329_020 Hb_007290_080--Hb_009384_020 Hb_009711_020 Hb_009711_020 Hb_007290_080--Hb_009711_020 Hb_000270_720 Hb_000270_720 Hb_008887_040--Hb_000270_720 Hb_004755_030 Hb_004755_030 Hb_008887_040--Hb_004755_030 Hb_000789_110 Hb_000789_110 Hb_008887_040--Hb_000789_110 Hb_008887_040--Hb_000159_070 Hb_168711_010 Hb_168711_010 Hb_008887_040--Hb_168711_010 Hb_002260_020 Hb_002260_020 Hb_008887_040--Hb_002260_020 Hb_060618_010--Hb_000836_140 Hb_002248_100 Hb_002248_100 Hb_060618_010--Hb_002248_100 Hb_001017_070 Hb_001017_070 Hb_060618_010--Hb_001017_070 Hb_007943_140 Hb_007943_140 Hb_060618_010--Hb_007943_140 Hb_010827_020 Hb_010827_020 Hb_060618_010--Hb_010827_020 Hb_000172_420--Hb_002248_100 Hb_006588_080 Hb_006588_080 Hb_000172_420--Hb_006588_080 Hb_000062_390 Hb_000062_390 Hb_000172_420--Hb_000062_390 Hb_000635_080 Hb_000635_080 Hb_000172_420--Hb_000635_080 Hb_000172_420--Hb_000270_720 Hb_008948_050 Hb_008948_050 Hb_000172_420--Hb_008948_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.39405 1.00478 2.59667 1.32121 3.69676 4.50539
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.7176 26.8725 2.53308 5.19418 3.4362

CAGE analysis