Hb_010815_030

Information

Type -
Description -
Location Contig10815: 18142-20674
Sequence    

Annotation

kegg
ID vvi:100260629
description (-)-germacrene D synthase
nr
ID XP_010644711.1
description PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
swissprot
ID Q6Q3H3
description (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1
trembl
ID F6I4Y2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0015g02070 PE=4 SV=1
Gene Ontology
ID GO:0010333
description (-)-germacrene d synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02521: 18023-18163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010815_030 0.0 - - PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
2 Hb_004871_020 0.0970398466 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: protein TRI1 [Jatropha curcas]
3 Hb_007441_300 0.1016798476 - - ATP binding protein, putative [Ricinus communis]
4 Hb_002226_040 0.1019979194 - - PREDICTED: uncharacterized protein LOC105641318 isoform X2 [Jatropha curcas]
5 Hb_009711_020 0.1067974605 - - PREDICTED: uncharacterized protein LOC105647794 isoform X2 [Jatropha curcas]
6 Hb_153544_010 0.1088052621 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]
7 Hb_000030_290 0.1089778807 - - PREDICTED: uncharacterized protein LOC100247068 [Vitis vinifera]
8 Hb_000676_160 0.1137422236 - - folate carrier protein, putative [Ricinus communis]
9 Hb_007290_080 0.1187968427 - - hypothetical protein CISIN_1g047098mg [Citrus sinensis]
10 Hb_000948_220 0.1195527431 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
11 Hb_000317_070 0.119688586 - - PREDICTED: uncharacterized protein LOC103942205 isoform X2 [Pyrus x bretschneideri]
12 Hb_003226_100 0.121965561 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]
13 Hb_009476_020 0.1230787356 - - tryptophan biosynthesis protein, putative [Ricinus communis]
14 Hb_000577_090 0.1245884537 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
15 Hb_000191_030 0.1251798135 - - hypothetical protein POPTR_0012s07830g [Populus trichocarpa]
16 Hb_002609_210 0.1256220206 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
17 Hb_001863_430 0.128162208 - - PREDICTED: probable protein phosphatase 2C 9 [Populus euphratica]
18 Hb_003018_020 0.128175305 - - PREDICTED: uncharacterized protein LOC105628697 [Jatropha curcas]
19 Hb_017491_060 0.1285349193 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
20 Hb_174865_010 0.1288287583 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_010815_030 Hb_010815_030 Hb_004871_020 Hb_004871_020 Hb_010815_030--Hb_004871_020 Hb_007441_300 Hb_007441_300 Hb_010815_030--Hb_007441_300 Hb_002226_040 Hb_002226_040 Hb_010815_030--Hb_002226_040 Hb_009711_020 Hb_009711_020 Hb_010815_030--Hb_009711_020 Hb_153544_010 Hb_153544_010 Hb_010815_030--Hb_153544_010 Hb_000030_290 Hb_000030_290 Hb_010815_030--Hb_000030_290 Hb_000317_070 Hb_000317_070 Hb_004871_020--Hb_000317_070 Hb_004871_020--Hb_153544_010 Hb_004871_020--Hb_007441_300 Hb_000525_020 Hb_000525_020 Hb_004871_020--Hb_000525_020 Hb_004871_020--Hb_009711_020 Hb_004871_020--Hb_000030_290 Hb_007441_300--Hb_000317_070 Hb_174865_010 Hb_174865_010 Hb_007441_300--Hb_174865_010 Hb_003018_020 Hb_003018_020 Hb_007441_300--Hb_003018_020 Hb_004459_040 Hb_004459_040 Hb_007441_300--Hb_004459_040 Hb_000948_220 Hb_000948_220 Hb_007441_300--Hb_000948_220 Hb_002226_040--Hb_000948_220 Hb_000030_200 Hb_000030_200 Hb_002226_040--Hb_000030_200 Hb_000175_320 Hb_000175_320 Hb_002226_040--Hb_000175_320 Hb_007120_090 Hb_007120_090 Hb_002226_040--Hb_007120_090 Hb_001288_030 Hb_001288_030 Hb_002226_040--Hb_001288_030 Hb_009711_020--Hb_000030_290 Hb_002609_210 Hb_002609_210 Hb_009711_020--Hb_002609_210 Hb_001616_040 Hb_001616_040 Hb_009711_020--Hb_001616_040 Hb_000334_210 Hb_000334_210 Hb_009711_020--Hb_000334_210 Hb_002477_140 Hb_002477_140 Hb_009711_020--Hb_002477_140 Hb_153544_010--Hb_000030_290 Hb_153544_010--Hb_000317_070 Hb_000417_360 Hb_000417_360 Hb_153544_010--Hb_000417_360 Hb_091433_020 Hb_091433_020 Hb_153544_010--Hb_091433_020 Hb_143496_010 Hb_143496_010 Hb_153544_010--Hb_143496_010 Hb_000030_290--Hb_001616_040 Hb_000030_290--Hb_000334_210 Hb_000331_470 Hb_000331_470 Hb_000030_290--Hb_000331_470 Hb_000030_290--Hb_002609_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.89429 0.923785 1.24469 1.5971 1.31939 0.959481
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.26868 5.6801 0.934723 1.38247 1.42993

CAGE analysis