Hb_002226_040

Information

Type -
Description -
Location Contig2226: 50028-50939
Sequence    

Annotation

kegg
ID rcu:RCOM_1095650
description hypothetical protein
nr
ID XP_012081257.1
description PREDICTED: uncharacterized protein LOC105641318 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LKU0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09569 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 049_N22r.ab1: 51844-52918

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002226_040 0.0 - - PREDICTED: uncharacterized protein LOC105641318 isoform X2 [Jatropha curcas]
2 Hb_010815_030 0.1019979194 - - PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
3 Hb_000948_220 0.1115140045 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
4 Hb_000030_200 0.1236737994 - - PREDICTED: early nodulin-93-like [Populus euphratica]
5 Hb_000175_320 0.1321933632 - - PREDICTED: formin-like protein 14 [Jatropha curcas]
6 Hb_007120_090 0.1328020109 - - PREDICTED: 60S ribosomal protein L35 [Jatropha curcas]
7 Hb_001288_030 0.134669206 - - -
8 Hb_009476_020 0.1378641507 - - tryptophan biosynthesis protein, putative [Ricinus communis]
9 Hb_007441_300 0.1406192512 - - ATP binding protein, putative [Ricinus communis]
10 Hb_000997_120 0.1417848867 - - 40S ribosomal protein S15E [Hevea brasiliensis]
11 Hb_001789_050 0.1449603538 - - 60S ribosomal protein L36-2 [Morus notabilis]
12 Hb_000045_250 0.1451194762 - - PREDICTED: uncharacterized protein LOC105646572 isoform X1 [Jatropha curcas]
13 Hb_002006_130 0.1470983858 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
14 Hb_000463_130 0.1482224907 - - unnamed protein product [Coffea canephora]
15 Hb_000676_160 0.1487289088 - - folate carrier protein, putative [Ricinus communis]
16 Hb_005307_050 0.1510532532 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
17 Hb_000975_180 0.151573104 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
18 Hb_027684_020 0.15235045 - - ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]
19 Hb_000577_090 0.1525465581 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
20 Hb_153544_010 0.1527275807 - - PREDICTED: coiled-coil domain-containing protein 130-like [Populus euphratica]

Gene co-expression network

sample Hb_002226_040 Hb_002226_040 Hb_010815_030 Hb_010815_030 Hb_002226_040--Hb_010815_030 Hb_000948_220 Hb_000948_220 Hb_002226_040--Hb_000948_220 Hb_000030_200 Hb_000030_200 Hb_002226_040--Hb_000030_200 Hb_000175_320 Hb_000175_320 Hb_002226_040--Hb_000175_320 Hb_007120_090 Hb_007120_090 Hb_002226_040--Hb_007120_090 Hb_001288_030 Hb_001288_030 Hb_002226_040--Hb_001288_030 Hb_004871_020 Hb_004871_020 Hb_010815_030--Hb_004871_020 Hb_007441_300 Hb_007441_300 Hb_010815_030--Hb_007441_300 Hb_009711_020 Hb_009711_020 Hb_010815_030--Hb_009711_020 Hb_153544_010 Hb_153544_010 Hb_010815_030--Hb_153544_010 Hb_000030_290 Hb_000030_290 Hb_010815_030--Hb_000030_290 Hb_000087_130 Hb_000087_130 Hb_000948_220--Hb_000087_130 Hb_000948_220--Hb_007120_090 Hb_002838_030 Hb_002838_030 Hb_000948_220--Hb_002838_030 Hb_001155_040 Hb_001155_040 Hb_000948_220--Hb_001155_040 Hb_000317_070 Hb_000317_070 Hb_000948_220--Hb_000317_070 Hb_174865_010 Hb_174865_010 Hb_000948_220--Hb_174865_010 Hb_000030_200--Hb_000087_130 Hb_072922_020 Hb_072922_020 Hb_000030_200--Hb_072922_020 Hb_000030_200--Hb_000948_220 Hb_000384_120 Hb_000384_120 Hb_000030_200--Hb_000384_120 Hb_000030_200--Hb_001155_040 Hb_010560_030 Hb_010560_030 Hb_000030_200--Hb_010560_030 Hb_003638_070 Hb_003638_070 Hb_000175_320--Hb_003638_070 Hb_000203_020 Hb_000203_020 Hb_000175_320--Hb_000203_020 Hb_003038_190 Hb_003038_190 Hb_000175_320--Hb_003038_190 Hb_002006_130 Hb_002006_130 Hb_000175_320--Hb_002006_130 Hb_023711_010 Hb_023711_010 Hb_000175_320--Hb_023711_010 Hb_000265_050 Hb_000265_050 Hb_000175_320--Hb_000265_050 Hb_000997_120 Hb_000997_120 Hb_007120_090--Hb_000997_120 Hb_001789_050 Hb_001789_050 Hb_007120_090--Hb_001789_050 Hb_007120_090--Hb_002838_030 Hb_000676_160 Hb_000676_160 Hb_007120_090--Hb_000676_160 Hb_012395_130 Hb_012395_130 Hb_007120_090--Hb_012395_130 Hb_003106_220 Hb_003106_220 Hb_001288_030--Hb_003106_220 Hb_000923_090 Hb_000923_090 Hb_001288_030--Hb_000923_090 Hb_001288_030--Hb_000030_200 Hb_006816_270 Hb_006816_270 Hb_001288_030--Hb_006816_270 Hb_124996_010 Hb_124996_010 Hb_001288_030--Hb_124996_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.82793 2.07918 1.86531 7.17109 2.88584 2.48294
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.1985 16.6652 2.08193 3.25444 3.22511

CAGE analysis