Hb_003638_070

Information

Type -
Description -
Location Contig3638: 116469-124644
Sequence    

Annotation

kegg
ID zma:103651319
description DNA repair helicase XPB1-like
nr
ID KCW72188.1
description hypothetical protein EUGRSUZ_E00638 [Eucalyptus grandis]
swissprot
ID Q9FUG4
description DNA repair helicase XPB2 OS=Arabidopsis thaliana GN=XPB2 PE=2 SV=1
trembl
ID K3Y5L8
description Uncharacterized protein OS=Setaria italica GN=Si009434m.g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37404: 116228-116713
cDNA
(Sanger)
(ID:Location)		 051_E10r.ab1: 124737-126900

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003638_070 0.0 - - hypothetical protein EUGRSUZ_E00638 [Eucalyptus grandis]
2 Hb_000175_320 0.0988190579 - - PREDICTED: formin-like protein 14 [Jatropha curcas]
3 Hb_003038_190 0.1345603966 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105645961 [Jatropha curcas]
4 Hb_000753_190 0.134683244 - - PREDICTED: D-aminoacyl-tRNA deacylase [Populus euphratica]
5 Hb_023711_010 0.1475473467 - - -
6 Hb_000577_090 0.1487848835 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
7 Hb_000487_230 0.1493636731 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
8 Hb_000699_090 0.1516577082 - - cyclophilin, putative [Ricinus communis]
9 Hb_002235_080 0.1537175599 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Vitis vinifera]
10 Hb_000028_100 0.1548480568 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]
11 Hb_000265_050 0.1561109503 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
12 Hb_000441_110 0.1574018797 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
13 Hb_000203_020 0.1598593386 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
14 Hb_000676_160 0.1610178932 - - folate carrier protein, putative [Ricinus communis]
15 Hb_002006_130 0.1618028505 - - PREDICTED: uncharacterized protein LOC105648712 [Jatropha curcas]
16 Hb_010815_030 0.1624273049 - - PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
17 Hb_000329_020 0.1624857486 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
18 Hb_001369_170 0.1629193064 - - PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]
19 Hb_000331_700 0.1674243154 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
20 Hb_001085_270 0.170060474 - - 60S ribosomal protein L13aA [Hevea brasiliensis]

Gene co-expression network

sample Hb_003638_070 Hb_003638_070 Hb_000175_320 Hb_000175_320 Hb_003638_070--Hb_000175_320 Hb_003038_190 Hb_003038_190 Hb_003638_070--Hb_003038_190 Hb_000753_190 Hb_000753_190 Hb_003638_070--Hb_000753_190 Hb_023711_010 Hb_023711_010 Hb_003638_070--Hb_023711_010 Hb_000577_090 Hb_000577_090 Hb_003638_070--Hb_000577_090 Hb_000487_230 Hb_000487_230 Hb_003638_070--Hb_000487_230 Hb_000203_020 Hb_000203_020 Hb_000175_320--Hb_000203_020 Hb_000175_320--Hb_003038_190 Hb_002006_130 Hb_002006_130 Hb_000175_320--Hb_002006_130 Hb_000175_320--Hb_023711_010 Hb_000265_050 Hb_000265_050 Hb_000175_320--Hb_000265_050 Hb_000699_090 Hb_000699_090 Hb_003038_190--Hb_000699_090 Hb_003038_190--Hb_000203_020 Hb_002235_080 Hb_002235_080 Hb_003038_190--Hb_002235_080 Hb_000331_700 Hb_000331_700 Hb_003038_190--Hb_000331_700 Hb_000093_110 Hb_000093_110 Hb_003038_190--Hb_000093_110 Hb_000753_190--Hb_023711_010 Hb_007290_080 Hb_007290_080 Hb_000753_190--Hb_007290_080 Hb_000010_260 Hb_000010_260 Hb_000753_190--Hb_000010_260 Hb_000329_020 Hb_000329_020 Hb_000753_190--Hb_000329_020 Hb_001387_020 Hb_001387_020 Hb_000753_190--Hb_001387_020 Hb_001301_050 Hb_001301_050 Hb_023711_010--Hb_001301_050 Hb_086639_090 Hb_086639_090 Hb_023711_010--Hb_086639_090 Hb_000184_100 Hb_000184_100 Hb_023711_010--Hb_000184_100 Hb_000599_280 Hb_000599_280 Hb_023711_010--Hb_000599_280 Hb_000577_090--Hb_000699_090 Hb_000577_090--Hb_000093_110 Hb_000577_090--Hb_002006_130 Hb_000840_180 Hb_000840_180 Hb_000577_090--Hb_000840_180 Hb_003929_150 Hb_003929_150 Hb_000577_090--Hb_003929_150 Hb_000676_160 Hb_000676_160 Hb_000577_090--Hb_000676_160 Hb_000441_110 Hb_000441_110 Hb_000487_230--Hb_000441_110 Hb_002231_030 Hb_002231_030 Hb_000487_230--Hb_002231_030 Hb_000086_230 Hb_000086_230 Hb_000487_230--Hb_000086_230 Hb_000487_230--Hb_000699_090 Hb_010812_040 Hb_010812_040 Hb_000487_230--Hb_010812_040 Hb_003992_240 Hb_003992_240 Hb_000487_230--Hb_003992_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.276055 0.465095 0.172922 0.437948 0.548089 0.347379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.988243 3.03246 0.478108 0.588234 0.860544

CAGE analysis