Hb_001387_020

Information

Type -
Description -
Location Contig1387: 25272-31503
Sequence    

Annotation

kegg
ID sot:102587892
description uncharacterized LOC102587892
nr
ID XP_006344949.1
description PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
swissprot
ID -
description -
trembl
ID M1C3V1
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400022970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10597: 26697-27839 , PASA_asmbl_10598: 26746-27489 , PASA_asmbl_10599: 31124-31534
cDNA
(Sanger)
(ID:Location)		 019_P11.ab1: 26746-27489 , 037_D02.ab1: 26697-27537

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001387_020 0.0 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
2 Hb_000010_260 0.1399439479 - - PREDICTED: uncharacterized protein LOC105640273 [Jatropha curcas]
3 Hb_003683_080 0.1420960797 - - Angio-associated migratory cell protein, putative [Ricinus communis]
4 Hb_000836_140 0.1520326281 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
5 Hb_000834_030 0.1525427641 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
6 Hb_000563_190 0.1528385331 - - hypothetical protein PRUPE_ppa002828mg [Prunus persica]
7 Hb_000707_020 0.1578355071 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
8 Hb_023711_010 0.1620394916 - - -
9 Hb_000753_190 0.1623170494 - - PREDICTED: D-aminoacyl-tRNA deacylase [Populus euphratica]
10 Hb_008318_010 0.1653906577 - - PREDICTED: WD repeat-containing protein 82-B isoform X1 [Jatropha curcas]
11 Hb_001136_060 0.1705395392 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
12 Hb_005307_050 0.1720710945 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
13 Hb_026048_070 0.1729398236 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
14 Hb_001700_020 0.1730785744 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
15 Hb_001242_140 0.1738962536 - - mitochondrial carrier protein, putative [Ricinus communis]
16 Hb_004931_100 0.1758601771 - - Actin depolymerizing factor 6 isoform 1 [Theobroma cacao]
17 Hb_001054_100 0.1770208875 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
18 Hb_012490_050 0.1774484381 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
19 Hb_001484_010 0.177532154 - - hypothetical protein POPTR_0005s07440g [Populus trichocarpa]
20 Hb_008699_020 0.1780509851 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]

Gene co-expression network

sample Hb_001387_020 Hb_001387_020 Hb_000010_260 Hb_000010_260 Hb_001387_020--Hb_000010_260 Hb_003683_080 Hb_003683_080 Hb_001387_020--Hb_003683_080 Hb_000836_140 Hb_000836_140 Hb_001387_020--Hb_000836_140 Hb_000834_030 Hb_000834_030 Hb_001387_020--Hb_000834_030 Hb_000563_190 Hb_000563_190 Hb_001387_020--Hb_000563_190 Hb_000707_020 Hb_000707_020 Hb_001387_020--Hb_000707_020 Hb_000083_090 Hb_000083_090 Hb_000010_260--Hb_000083_090 Hb_000010_260--Hb_003683_080 Hb_001136_060 Hb_001136_060 Hb_000010_260--Hb_001136_060 Hb_026048_070 Hb_026048_070 Hb_000010_260--Hb_026048_070 Hb_000483_250 Hb_000483_250 Hb_000010_260--Hb_000483_250 Hb_002609_210 Hb_002609_210 Hb_000010_260--Hb_002609_210 Hb_008318_010 Hb_008318_010 Hb_003683_080--Hb_008318_010 Hb_000080_210 Hb_000080_210 Hb_003683_080--Hb_000080_210 Hb_003683_080--Hb_000483_250 Hb_003683_080--Hb_026048_070 Hb_000836_140--Hb_000483_250 Hb_008699_020 Hb_008699_020 Hb_000836_140--Hb_008699_020 Hb_060618_010 Hb_060618_010 Hb_000836_140--Hb_060618_010 Hb_000096_130 Hb_000096_130 Hb_000836_140--Hb_000096_130 Hb_002603_060 Hb_002603_060 Hb_000836_140--Hb_002603_060 Hb_000506_120 Hb_000506_120 Hb_000836_140--Hb_000506_120 Hb_012490_050 Hb_012490_050 Hb_000834_030--Hb_012490_050 Hb_000834_030--Hb_000707_020 Hb_005463_140 Hb_005463_140 Hb_000834_030--Hb_005463_140 Hb_003777_210 Hb_003777_210 Hb_000834_030--Hb_003777_210 Hb_001284_030 Hb_001284_030 Hb_000834_030--Hb_001284_030 Hb_000042_200 Hb_000042_200 Hb_000834_030--Hb_000042_200 Hb_001484_010 Hb_001484_010 Hb_000563_190--Hb_001484_010 Hb_000563_190--Hb_000080_210 Hb_003098_020 Hb_003098_020 Hb_000563_190--Hb_003098_020 Hb_000896_040 Hb_000896_040 Hb_000563_190--Hb_000896_040 Hb_007054_010 Hb_007054_010 Hb_000563_190--Hb_007054_010 Hb_000707_020--Hb_012490_050 Hb_000302_280 Hb_000302_280 Hb_000707_020--Hb_000302_280 Hb_138585_040 Hb_138585_040 Hb_000707_020--Hb_138585_040 Hb_001005_080 Hb_001005_080 Hb_000707_020--Hb_001005_080 Hb_000049_050 Hb_000049_050 Hb_000707_020--Hb_000049_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.24006 0.895524 0.864531 3.66274 1.11653 3.21622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8403 13.973 3.53768 9.82838 5.42099

CAGE analysis