Hb_000563_190

Information

Type -
Description -
Location Contig563: 112410-118927
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa002828mg
description hypothetical protein
nr
ID XP_007221981.1
description hypothetical protein PRUPE_ppa002828mg [Prunus persica]
swissprot
ID -
description -
trembl
ID M5XVK6
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002828mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48898: 112638-113867
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000563_190 0.0 - - hypothetical protein PRUPE_ppa002828mg [Prunus persica]
2 Hb_001484_010 0.1218382585 - - hypothetical protein POPTR_0005s07440g [Populus trichocarpa]
3 Hb_000080_210 0.1446343423 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
4 Hb_003098_020 0.1507203311 - - 40S ribosomal protein S5B [Hevea brasiliensis]
5 Hb_001387_020 0.1528385331 - - PREDICTED: uncharacterized protein LOC102587892 [Solanum tuberosum]
6 Hb_000896_040 0.1540327671 - - BnaC02g13240D [Brassica napus]
7 Hb_007054_010 0.1559036897 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
8 Hb_001054_100 0.1560679624 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
9 Hb_001242_140 0.1566542548 - - mitochondrial carrier protein, putative [Ricinus communis]
10 Hb_004907_060 0.1574153812 - - PREDICTED: tropinone reductase homolog At5g06060-like [Jatropha curcas]
11 Hb_004216_050 0.1578967017 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
12 Hb_000685_050 0.1591762201 - - PREDICTED: mitochondrial inner membrane protein OXA1-like [Populus euphratica]
13 Hb_000707_020 0.1594564111 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
14 Hb_181600_010 0.1594941702 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
15 Hb_180074_010 0.1643455656 - - Single-stranded DNA-binding protein, mitochondrial precursor, putative [Ricinus communis]
16 Hb_005914_010 0.164673801 - - PREDICTED: peroxisomal membrane protein PMP22 [Jatropha curcas]
17 Hb_000834_030 0.1652023692 - - PREDICTED: protein Mpv17 isoform X2 [Jatropha curcas]
18 Hb_026048_070 0.1652059245 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
19 Hb_002835_100 0.1654250496 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 6-like [Jatropha curcas]
20 Hb_002613_020 0.1673346306 - - ADP-ribose pyrophosphatase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000563_190 Hb_000563_190 Hb_001484_010 Hb_001484_010 Hb_000563_190--Hb_001484_010 Hb_000080_210 Hb_000080_210 Hb_000563_190--Hb_000080_210 Hb_003098_020 Hb_003098_020 Hb_000563_190--Hb_003098_020 Hb_001387_020 Hb_001387_020 Hb_000563_190--Hb_001387_020 Hb_000896_040 Hb_000896_040 Hb_000563_190--Hb_000896_040 Hb_007054_010 Hb_007054_010 Hb_000563_190--Hb_007054_010 Hb_000072_180 Hb_000072_180 Hb_001484_010--Hb_000072_180 Hb_027654_050 Hb_027654_050 Hb_001484_010--Hb_027654_050 Hb_004672_010 Hb_004672_010 Hb_001484_010--Hb_004672_010 Hb_006420_100 Hb_006420_100 Hb_001484_010--Hb_006420_100 Hb_000016_080 Hb_000016_080 Hb_001484_010--Hb_000016_080 Hb_000417_260 Hb_000417_260 Hb_001484_010--Hb_000417_260 Hb_005092_060 Hb_005092_060 Hb_000080_210--Hb_005092_060 Hb_009113_050 Hb_009113_050 Hb_000080_210--Hb_009113_050 Hb_006907_130 Hb_006907_130 Hb_000080_210--Hb_006907_130 Hb_012794_010 Hb_012794_010 Hb_000080_210--Hb_012794_010 Hb_006277_110 Hb_006277_110 Hb_000080_210--Hb_006277_110 Hb_002662_030 Hb_002662_030 Hb_000080_210--Hb_002662_030 Hb_005305_150 Hb_005305_150 Hb_003098_020--Hb_005305_150 Hb_186982_040 Hb_186982_040 Hb_003098_020--Hb_186982_040 Hb_000136_350 Hb_000136_350 Hb_003098_020--Hb_000136_350 Hb_000210_120 Hb_000210_120 Hb_003098_020--Hb_000210_120 Hb_003098_020--Hb_000896_040 Hb_005914_170 Hb_005914_170 Hb_003098_020--Hb_005914_170 Hb_000010_260 Hb_000010_260 Hb_001387_020--Hb_000010_260 Hb_003683_080 Hb_003683_080 Hb_001387_020--Hb_003683_080 Hb_000836_140 Hb_000836_140 Hb_001387_020--Hb_000836_140 Hb_000834_030 Hb_000834_030 Hb_001387_020--Hb_000834_030 Hb_000707_020 Hb_000707_020 Hb_001387_020--Hb_000707_020 Hb_000922_040 Hb_000922_040 Hb_000896_040--Hb_000922_040 Hb_180074_010 Hb_180074_010 Hb_000896_040--Hb_180074_010 Hb_000896_040--Hb_000417_260 Hb_091433_020 Hb_091433_020 Hb_000896_040--Hb_091433_020 Hb_000896_040--Hb_004672_010 Hb_000685_050 Hb_000685_050 Hb_007054_010--Hb_000685_050 Hb_002284_230 Hb_002284_230 Hb_007054_010--Hb_002284_230 Hb_000574_130 Hb_000574_130 Hb_007054_010--Hb_000574_130 Hb_007054_010--Hb_006420_100 Hb_007054_010--Hb_003098_020 Hb_007054_010--Hb_000072_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.117781 0.0957002 0.311847 0.335817 0.1361 0.580381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.10623 1.34076 0.708098 1.28565 0.443573

CAGE analysis