Hb_000080_210

Information

Type -
Description -
Location Contig80: 210101-219869
Sequence    

Annotation

kegg
ID tcc:TCM_019960
description hypothetical protein
nr
ID XP_012065219.1
description PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LI47
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20914 PE=4 SV=1
Gene Ontology
ID GO:0003677
description histone h2a deubiquitinase mysm1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58752: 212681-219756 , PASA_asmbl_58753: 217950-219756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000080_210 0.0 - - PREDICTED: uncharacterized protein LOC105628422 [Jatropha curcas]
2 Hb_005092_060 0.1119627743 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
3 Hb_009113_050 0.118611273 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
4 Hb_006907_130 0.121084263 - - unnamed protein product [Coffea canephora]
5 Hb_012794_010 0.1238126132 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
6 Hb_006277_110 0.1305804013 - - protein with unknown function [Ricinus communis]
7 Hb_002662_030 0.1319533369 - - PREDICTED: mannose-P-dolichol utilization defect 1 protein homolog 2 [Jatropha curcas]
8 Hb_000260_810 0.1337017754 - - -
9 Hb_000635_150 0.137848469 - - mitochondrial import receptor subunit TOM20-2 family protein [Populus trichocarpa]
10 Hb_000230_240 0.1384085499 - - tRNA/rRNA methyltransferase family protein [Populus trichocarpa]
11 Hb_011644_030 0.1423393867 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
12 Hb_002422_070 0.1436081704 - - PREDICTED: putative protein TPRXL [Malus domestica]
13 Hb_000563_190 0.1446343423 - - hypothetical protein PRUPE_ppa002828mg [Prunus persica]
14 Hb_000072_180 0.1452164243 - - PREDICTED: EVI5-like protein [Jatropha curcas]
15 Hb_116894_020 0.146058214 - - hypothetical protein POPTR_0008s07660g [Populus trichocarpa]
16 Hb_004672_010 0.1463571682 - - ecotropic viral integration site, putative [Ricinus communis]
17 Hb_000317_410 0.1464637884 - - PREDICTED: UDP-glycosyltransferase 73C5-like [Jatropha curcas]
18 Hb_001054_100 0.1475759374 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
19 Hb_001484_010 0.1488647671 - - hypothetical protein POPTR_0005s07440g [Populus trichocarpa]
20 Hb_001421_060 0.1495272757 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000080_210 Hb_000080_210 Hb_005092_060 Hb_005092_060 Hb_000080_210--Hb_005092_060 Hb_009113_050 Hb_009113_050 Hb_000080_210--Hb_009113_050 Hb_006907_130 Hb_006907_130 Hb_000080_210--Hb_006907_130 Hb_012794_010 Hb_012794_010 Hb_000080_210--Hb_012794_010 Hb_006277_110 Hb_006277_110 Hb_000080_210--Hb_006277_110 Hb_002662_030 Hb_002662_030 Hb_000080_210--Hb_002662_030 Hb_001360_050 Hb_001360_050 Hb_005092_060--Hb_001360_050 Hb_001235_030 Hb_001235_030 Hb_005092_060--Hb_001235_030 Hb_002759_060 Hb_002759_060 Hb_005092_060--Hb_002759_060 Hb_000635_150 Hb_000635_150 Hb_005092_060--Hb_000635_150 Hb_004218_110 Hb_004218_110 Hb_005092_060--Hb_004218_110 Hb_001833_110 Hb_001833_110 Hb_005092_060--Hb_001833_110 Hb_009113_050--Hb_000635_150 Hb_006816_530 Hb_006816_530 Hb_009113_050--Hb_006816_530 Hb_000496_120 Hb_000496_120 Hb_009113_050--Hb_000496_120 Hb_000975_110 Hb_000975_110 Hb_009113_050--Hb_000975_110 Hb_011644_030 Hb_011644_030 Hb_009113_050--Hb_011644_030 Hb_000024_030 Hb_000024_030 Hb_009113_050--Hb_000024_030 Hb_015934_070 Hb_015934_070 Hb_006907_130--Hb_015934_070 Hb_031862_100 Hb_031862_100 Hb_006907_130--Hb_031862_100 Hb_002000_080 Hb_002000_080 Hb_006907_130--Hb_002000_080 Hb_001386_040 Hb_001386_040 Hb_006907_130--Hb_001386_040 Hb_002111_040 Hb_002111_040 Hb_006907_130--Hb_002111_040 Hb_001545_080 Hb_001545_080 Hb_006907_130--Hb_001545_080 Hb_012794_010--Hb_005092_060 Hb_000260_810 Hb_000260_810 Hb_012794_010--Hb_000260_810 Hb_002422_070 Hb_002422_070 Hb_012794_010--Hb_002422_070 Hb_011537_110 Hb_011537_110 Hb_012794_010--Hb_011537_110 Hb_011457_090 Hb_011457_090 Hb_012794_010--Hb_011457_090 Hb_001158_050 Hb_001158_050 Hb_012794_010--Hb_001158_050 Hb_000392_190 Hb_000392_190 Hb_006277_110--Hb_000392_190 Hb_002284_230 Hb_002284_230 Hb_006277_110--Hb_002284_230 Hb_152371_010 Hb_152371_010 Hb_006277_110--Hb_152371_010 Hb_019654_030 Hb_019654_030 Hb_006277_110--Hb_019654_030 Hb_006277_110--Hb_006907_130 Hb_003940_040 Hb_003940_040 Hb_006277_110--Hb_003940_040 Hb_002296_040 Hb_002296_040 Hb_002662_030--Hb_002296_040 Hb_002596_040 Hb_002596_040 Hb_002662_030--Hb_002596_040 Hb_000792_130 Hb_000792_130 Hb_002662_030--Hb_000792_130 Hb_008695_040 Hb_008695_040 Hb_002662_030--Hb_008695_040 Hb_005400_030 Hb_005400_030 Hb_002662_030--Hb_005400_030 Hb_000656_170 Hb_000656_170 Hb_002662_030--Hb_000656_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.625 1.35647 2.26869 3.38219 0.838945 6.93642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.47437 7.54299 5.75925 6.5797 3.74081

CAGE analysis