Hb_006816_270

Information

Type -
Description -
Location Contig6816: 179432-179740
Sequence    

Annotation

kegg
ID rcu:RCOM_1434550
description hypothetical protein
nr
ID XP_002512490.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFH1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1434550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53817: 180214-180958
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006816_270 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000923_090 0.155932402 - - -
3 Hb_000031_260 0.162732859 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
4 Hb_116420_010 0.1710828566 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
5 Hb_001369_250 0.173714394 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
6 Hb_001288_030 0.173807749 - - -
7 Hb_000390_140 0.1852879363 - - PREDICTED: putative gamma-glutamylcyclotransferase At3g02910 [Jatropha curcas]
8 Hb_010174_150 0.1855967177 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_002609_160 0.1856281327 - - PREDICTED: GDP-mannose transporter GONST2 [Jatropha curcas]
10 Hb_017491_020 0.1862032026 - - hypothetical protein B456_011G056700 [Gossypium raimondii]
11 Hb_003106_220 0.1862922566 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
12 Hb_004429_090 0.1874592051 - - PREDICTED: ras GTPase-activating protein-binding protein 1-like isoform X1 [Jatropha curcas]
13 Hb_006384_010 0.188907442 - - WD-repeat protein, putative [Ricinus communis]
14 Hb_006698_030 0.1907730369 - - PREDICTED: uncharacterized protein LOC105633969 [Jatropha curcas]
15 Hb_001476_060 0.1924522208 - - PREDICTED: uncharacterized protein At5g01610 [Jatropha curcas]
16 Hb_004800_060 0.1932849452 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]
17 Hb_000555_100 0.1943382601 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
18 Hb_000889_010 0.1945064498 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]
19 Hb_000187_040 0.1946492292 - - PREDICTED: pyridoxal kinase isoform X5 [Vitis vinifera]
20 Hb_050959_010 0.1972364094 - - -

Gene co-expression network

sample Hb_006816_270 Hb_006816_270 Hb_000923_090 Hb_000923_090 Hb_006816_270--Hb_000923_090 Hb_000031_260 Hb_000031_260 Hb_006816_270--Hb_000031_260 Hb_116420_010 Hb_116420_010 Hb_006816_270--Hb_116420_010 Hb_001369_250 Hb_001369_250 Hb_006816_270--Hb_001369_250 Hb_001288_030 Hb_001288_030 Hb_006816_270--Hb_001288_030 Hb_000390_140 Hb_000390_140 Hb_006816_270--Hb_000390_140 Hb_000923_090--Hb_000390_140 Hb_004162_210 Hb_004162_210 Hb_000923_090--Hb_004162_210 Hb_008695_050 Hb_008695_050 Hb_000923_090--Hb_008695_050 Hb_004800_060 Hb_004800_060 Hb_000923_090--Hb_004800_060 Hb_002609_160 Hb_002609_160 Hb_000923_090--Hb_002609_160 Hb_007894_060 Hb_007894_060 Hb_000923_090--Hb_007894_060 Hb_000286_060 Hb_000286_060 Hb_000031_260--Hb_000286_060 Hb_000345_250 Hb_000345_250 Hb_000031_260--Hb_000345_250 Hb_000227_070 Hb_000227_070 Hb_000031_260--Hb_000227_070 Hb_000031_260--Hb_001369_250 Hb_010174_150 Hb_010174_150 Hb_000031_260--Hb_010174_150 Hb_003038_140 Hb_003038_140 Hb_000031_260--Hb_003038_140 Hb_006384_010 Hb_006384_010 Hb_116420_010--Hb_006384_010 Hb_001159_150 Hb_001159_150 Hb_116420_010--Hb_001159_150 Hb_009680_020 Hb_009680_020 Hb_116420_010--Hb_009680_020 Hb_007943_200 Hb_007943_200 Hb_116420_010--Hb_007943_200 Hb_000676_140 Hb_000676_140 Hb_116420_010--Hb_000676_140 Hb_002675_140 Hb_002675_140 Hb_001369_250--Hb_002675_140 Hb_001369_250--Hb_010174_150 Hb_000555_100 Hb_000555_100 Hb_001369_250--Hb_000555_100 Hb_010560_050 Hb_010560_050 Hb_001369_250--Hb_010560_050 Hb_002357_060 Hb_002357_060 Hb_001369_250--Hb_002357_060 Hb_000665_050 Hb_000665_050 Hb_001369_250--Hb_000665_050 Hb_002226_040 Hb_002226_040 Hb_001288_030--Hb_002226_040 Hb_003106_220 Hb_003106_220 Hb_001288_030--Hb_003106_220 Hb_001288_030--Hb_000923_090 Hb_000030_200 Hb_000030_200 Hb_001288_030--Hb_000030_200 Hb_124996_010 Hb_124996_010 Hb_001288_030--Hb_124996_010 Hb_000390_140--Hb_008695_050 Hb_000072_210 Hb_000072_210 Hb_000390_140--Hb_000072_210 Hb_000390_140--Hb_002609_160 Hb_002636_080 Hb_002636_080 Hb_000390_140--Hb_002636_080 Hb_004734_040 Hb_004734_040 Hb_000390_140--Hb_004734_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.67299 0.962366 1.26726 5.25839 0.863641 1.14659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.17385 5.74983 0.395294 5.68965 1.2897

CAGE analysis