Hb_001159_150

Information

Type -
Description -
Location Contig1159: 137995-141078
Sequence    

Annotation

kegg
ID rcu:RCOM_1681190
description ATP-dependent Clp protease proteolytic subunit, putative (EC:3.4.21.92)
nr
ID XP_012087080.1
description PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q9XJ36
description ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic OS=Arabidopsis thaliana GN=CLPR2 PE=1 SV=1
trembl
ID A0A067JRW2
description ATP-dependent Clp protease proteolytic subunit OS=Jatropha curcas GN=JCGZ_20739 PE=3 SV=1
Gene Ontology
ID GO:0009534
description atp-dependent clp protease proteolytic subunit-related protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04784: 138786-139239
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001159_150 0.0 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_116420_010 0.1494662934 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
3 Hb_003747_060 0.1495489283 - - PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 isoform X2 [Cucumis sativus]
4 Hb_007943_200 0.1608567687 - - Uncharacterized protein isoform 2 [Theobroma cacao]
5 Hb_002477_050 0.1935583011 - - unnamed protein product [Coffea canephora]
6 Hb_000365_050 0.1978454123 - - -
7 Hb_011794_080 0.2003146315 - - acyl-CoA thioesterase, putative [Ricinus communis]
8 Hb_006153_030 0.201359531 - - PREDICTED: probable transaldolase [Jatropha curcas]
9 Hb_001014_110 0.2021237595 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
10 Hb_006384_010 0.2035452714 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_123964_010 0.2091389648 - - PREDICTED: U1 small nuclear ribonucleoprotein 70 kDa [Jatropha curcas]
12 Hb_002811_030 0.2095115728 - - PREDICTED: cysteine synthase [Jatropha curcas]
13 Hb_002447_120 0.2126559401 - - hypothetical protein O988_01801, partial [Pseudogymnoascus pannorum VKM F-3808]
14 Hb_005701_060 0.2129497264 - - hypothetical protein JCGZ_04513 [Jatropha curcas]
15 Hb_005527_020 0.2142497332 - - PREDICTED: uncharacterized protein LOC105643027 [Jatropha curcas]
16 Hb_003918_020 0.2165525117 - - -
17 Hb_002260_150 0.2166371772 - - PREDICTED: uncharacterized protein LOC105647187 isoform X2 [Jatropha curcas]
18 Hb_143629_130 0.216984726 - - unnamed protein product [Coffea canephora]
19 Hb_001119_060 0.2175415555 - - PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X3 [Malus domestica]
20 Hb_009680_020 0.2177646666 - - PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]

Gene co-expression network

sample Hb_001159_150 Hb_001159_150 Hb_116420_010 Hb_116420_010 Hb_001159_150--Hb_116420_010 Hb_003747_060 Hb_003747_060 Hb_001159_150--Hb_003747_060 Hb_007943_200 Hb_007943_200 Hb_001159_150--Hb_007943_200 Hb_002477_050 Hb_002477_050 Hb_001159_150--Hb_002477_050 Hb_000365_050 Hb_000365_050 Hb_001159_150--Hb_000365_050 Hb_011794_080 Hb_011794_080 Hb_001159_150--Hb_011794_080 Hb_006384_010 Hb_006384_010 Hb_116420_010--Hb_006384_010 Hb_006816_270 Hb_006816_270 Hb_116420_010--Hb_006816_270 Hb_009680_020 Hb_009680_020 Hb_116420_010--Hb_009680_020 Hb_116420_010--Hb_007943_200 Hb_000676_140 Hb_000676_140 Hb_116420_010--Hb_000676_140 Hb_002260_150 Hb_002260_150 Hb_003747_060--Hb_002260_150 Hb_002811_030 Hb_002811_030 Hb_003747_060--Hb_002811_030 Hb_003747_060--Hb_011794_080 Hb_001119_060 Hb_001119_060 Hb_003747_060--Hb_001119_060 Hb_008406_190 Hb_008406_190 Hb_003747_060--Hb_008406_190 Hb_010423_040 Hb_010423_040 Hb_003747_060--Hb_010423_040 Hb_006153_030 Hb_006153_030 Hb_007943_200--Hb_006153_030 Hb_002477_010 Hb_002477_010 Hb_007943_200--Hb_002477_010 Hb_005694_020 Hb_005694_020 Hb_007943_200--Hb_005694_020 Hb_143629_130 Hb_143629_130 Hb_007943_200--Hb_143629_130 Hb_148130_020 Hb_148130_020 Hb_007943_200--Hb_148130_020 Hb_002735_050 Hb_002735_050 Hb_007943_200--Hb_002735_050 Hb_000215_310 Hb_000215_310 Hb_002477_050--Hb_000215_310 Hb_002477_050--Hb_143629_130 Hb_099116_010 Hb_099116_010 Hb_002477_050--Hb_099116_010 Hb_001195_160 Hb_001195_160 Hb_002477_050--Hb_001195_160 Hb_004709_020 Hb_004709_020 Hb_002477_050--Hb_004709_020 Hb_006629_010 Hb_006629_010 Hb_002477_050--Hb_006629_010 Hb_000365_050--Hb_011794_080 Hb_004668_090 Hb_004668_090 Hb_000365_050--Hb_004668_090 Hb_132880_040 Hb_132880_040 Hb_000365_050--Hb_132880_040 Hb_002675_140 Hb_002675_140 Hb_000365_050--Hb_002675_140 Hb_000115_150 Hb_000115_150 Hb_000365_050--Hb_000115_150 Hb_001157_200 Hb_001157_200 Hb_000365_050--Hb_001157_200 Hb_025194_100 Hb_025194_100 Hb_011794_080--Hb_025194_100 Hb_001571_050 Hb_001571_050 Hb_011794_080--Hb_001571_050 Hb_000994_120 Hb_000994_120 Hb_011794_080--Hb_000994_120 Hb_000392_190 Hb_000392_190 Hb_011794_080--Hb_000392_190 Hb_009787_030 Hb_009787_030 Hb_011794_080--Hb_009787_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.116508 0.150032 0.0958505 0.621889 0.285867 0.49281
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.545815 0.535987 0 0.624486 0.3999

CAGE analysis