Hb_003747_060

Information

Type -
Description -
Location Contig3747: 45977-46508
Sequence    

Annotation

kegg
ID crb:CARUB_v10017208mg
description hypothetical protein
nr
ID XP_011655188.1
description PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 isoform X2 [Cucumis sativus]
swissprot
ID -
description -
trembl
ID R0FPJ0
description Uncharacterized protein (Fragment) OS=Capsella rubella GN=CARUB_v10017208mg PE=4 SV=1
Gene Ontology
ID GO:0005768
description cmp-n-acetylneuraminate-beta-galactosamide-alpha- -sialyltransferase 2 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_38208: 45802-46423
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003747_060 0.0 - - PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 isoform X2 [Cucumis sativus]
2 Hb_002260_150 0.1230136925 - - PREDICTED: uncharacterized protein LOC105647187 isoform X2 [Jatropha curcas]
3 Hb_002811_030 0.1294874253 - - PREDICTED: cysteine synthase [Jatropha curcas]
4 Hb_011794_080 0.135015152 - - acyl-CoA thioesterase, putative [Ricinus communis]
5 Hb_001119_060 0.1372077016 - - PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X3 [Malus domestica]
6 Hb_008406_190 0.14198113 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
7 Hb_010423_040 0.142199547 - - hypothetical protein JCGZ_17463 [Jatropha curcas]
8 Hb_025194_100 0.1427000555 - - PREDICTED: probable 2-oxoglutarate/Fe(II)-dependent dioxygenase [Jatropha curcas]
9 Hb_023732_090 0.1435907991 - - WD-repeat protein, putative [Ricinus communis]
10 Hb_000392_190 0.1447469663 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
11 Hb_005016_050 0.1478353813 - - -
12 Hb_001159_150 0.1495489283 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic isoform X2 [Jatropha curcas]
13 Hb_002078_200 0.1508113363 - - Mitochondrial import receptor subunit TOM20, putative [Ricinus communis]
14 Hb_002893_080 0.1543821152 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
15 Hb_000270_290 0.1553163525 - - 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]
16 Hb_028420_020 0.1562182227 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
17 Hb_002596_040 0.1571601995 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
18 Hb_003633_030 0.1576220192 - - f-actin capping protein alpha, putative [Ricinus communis]
19 Hb_000795_060 0.1580558193 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
20 Hb_005615_080 0.1589450838 - - PREDICTED: uncharacterized protein LOC105649609 [Jatropha curcas]

Gene co-expression network

sample Hb_003747_060 Hb_003747_060 Hb_002260_150 Hb_002260_150 Hb_003747_060--Hb_002260_150 Hb_002811_030 Hb_002811_030 Hb_003747_060--Hb_002811_030 Hb_011794_080 Hb_011794_080 Hb_003747_060--Hb_011794_080 Hb_001119_060 Hb_001119_060 Hb_003747_060--Hb_001119_060 Hb_008406_190 Hb_008406_190 Hb_003747_060--Hb_008406_190 Hb_010423_040 Hb_010423_040 Hb_003747_060--Hb_010423_040 Hb_002296_040 Hb_002296_040 Hb_002260_150--Hb_002296_040 Hb_005615_080 Hb_005615_080 Hb_002260_150--Hb_005615_080 Hb_002596_040 Hb_002596_040 Hb_002260_150--Hb_002596_040 Hb_002260_150--Hb_010423_040 Hb_000326_090 Hb_000326_090 Hb_002260_150--Hb_000326_090 Hb_003633_030 Hb_003633_030 Hb_002260_150--Hb_003633_030 Hb_000721_040 Hb_000721_040 Hb_002811_030--Hb_000721_040 Hb_000392_190 Hb_000392_190 Hb_002811_030--Hb_000392_190 Hb_002811_030--Hb_011794_080 Hb_000466_140 Hb_000466_140 Hb_002811_030--Hb_000466_140 Hb_001348_020 Hb_001348_020 Hb_002811_030--Hb_001348_020 Hb_000111_320 Hb_000111_320 Hb_002811_030--Hb_000111_320 Hb_000365_050 Hb_000365_050 Hb_011794_080--Hb_000365_050 Hb_025194_100 Hb_025194_100 Hb_011794_080--Hb_025194_100 Hb_001571_050 Hb_001571_050 Hb_011794_080--Hb_001571_050 Hb_000994_120 Hb_000994_120 Hb_011794_080--Hb_000994_120 Hb_011794_080--Hb_000392_190 Hb_009787_030 Hb_009787_030 Hb_011794_080--Hb_009787_030 Hb_001247_310 Hb_001247_310 Hb_001119_060--Hb_001247_310 Hb_000074_080 Hb_000074_080 Hb_001119_060--Hb_000074_080 Hb_001119_060--Hb_000466_140 Hb_001119_060--Hb_000111_320 Hb_002965_090 Hb_002965_090 Hb_001119_060--Hb_002965_090 Hb_000392_430 Hb_000392_430 Hb_001119_060--Hb_000392_430 Hb_007017_030 Hb_007017_030 Hb_008406_190--Hb_007017_030 Hb_002893_080 Hb_002893_080 Hb_008406_190--Hb_002893_080 Hb_000103_080 Hb_000103_080 Hb_008406_190--Hb_000103_080 Hb_003333_060 Hb_003333_060 Hb_008406_190--Hb_003333_060 Hb_008406_190--Hb_010423_040 Hb_001828_190 Hb_001828_190 Hb_008406_190--Hb_001828_190 Hb_010423_040--Hb_003333_060 Hb_010423_040--Hb_002296_040 Hb_010423_040--Hb_005615_080 Hb_000103_090 Hb_000103_090 Hb_010423_040--Hb_000103_090 Hb_010423_040--Hb_000103_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.570511 0.239757 0.321415 1.36743 1.00402 1.74636
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.87758 1.72305 0.363019 1.90914 1.18695

CAGE analysis