Hb_000721_040

Information

Type -
Description -
Location Contig721: 56927-59998
Sequence    

Annotation

kegg
ID rcu:RCOM_1714560
description catalytic, putative
nr
ID XP_012074672.1
description PREDICTED: uncharacterized protein LOC105636110 isoform X1 [Jatropha curcas]
swissprot
ID B1NWE1
description DNA-directed RNA polymerase subunit beta' OS=Manihot esculenta GN=rpoC1 PE=3 SV=1
trembl
ID B9SJU8
description Catalytic, putative OS=Ricinus communis GN=RCOM_1714560 PE=4 SV=1
Gene Ontology
ID GO:0016787
description hydrolase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55658: 57365-58161
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000721_040 0.0 - - PREDICTED: uncharacterized protein LOC105636110 isoform X1 [Jatropha curcas]
2 Hb_002811_030 0.0953710213 - - PREDICTED: cysteine synthase [Jatropha curcas]
3 Hb_004800_200 0.1023577477 - - -
4 Hb_011674_020 0.1130285802 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
5 Hb_000110_190 0.1135255152 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
6 Hb_000001_190 0.1282097171 - - hypothetical protein CISIN_1g0082522mg, partial [Citrus sinensis]
7 Hb_179306_020 0.1301556991 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
8 Hb_000038_080 0.133740938 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
9 Hb_011794_080 0.1346278187 - - acyl-CoA thioesterase, putative [Ricinus communis]
10 Hb_019616_020 0.1346666619 - - PREDICTED: alanine--tRNA ligase [Jatropha curcas]
11 Hb_003253_050 0.1346810864 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Jatropha curcas]
12 Hb_099878_030 0.1347604798 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
13 Hb_001862_140 0.136408374 - - natural resistance-associated macrophage protein, putative [Ricinus communis]
14 Hb_000365_050 0.1364453736 - - -
15 Hb_005357_160 0.1366035039 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
16 Hb_002686_310 0.1377200932 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
17 Hb_002391_290 0.1379647561 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
18 Hb_000872_010 0.1380416755 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
19 Hb_000466_140 0.1381811811 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
20 Hb_000862_030 0.1384705508 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000721_040 Hb_000721_040 Hb_002811_030 Hb_002811_030 Hb_000721_040--Hb_002811_030 Hb_004800_200 Hb_004800_200 Hb_000721_040--Hb_004800_200 Hb_011674_020 Hb_011674_020 Hb_000721_040--Hb_011674_020 Hb_000110_190 Hb_000110_190 Hb_000721_040--Hb_000110_190 Hb_000001_190 Hb_000001_190 Hb_000721_040--Hb_000001_190 Hb_179306_020 Hb_179306_020 Hb_000721_040--Hb_179306_020 Hb_000392_190 Hb_000392_190 Hb_002811_030--Hb_000392_190 Hb_011794_080 Hb_011794_080 Hb_002811_030--Hb_011794_080 Hb_000466_140 Hb_000466_140 Hb_002811_030--Hb_000466_140 Hb_001348_020 Hb_001348_020 Hb_002811_030--Hb_001348_020 Hb_000111_320 Hb_000111_320 Hb_002811_030--Hb_000111_320 Hb_004800_200--Hb_000110_190 Hb_056691_060 Hb_056691_060 Hb_004800_200--Hb_056691_060 Hb_000872_010 Hb_000872_010 Hb_004800_200--Hb_000872_010 Hb_004143_160 Hb_004143_160 Hb_004800_200--Hb_004143_160 Hb_002025_330 Hb_002025_330 Hb_004800_200--Hb_002025_330 Hb_002968_080 Hb_002968_080 Hb_004800_200--Hb_002968_080 Hb_013726_090 Hb_013726_090 Hb_011674_020--Hb_013726_090 Hb_001571_050 Hb_001571_050 Hb_011674_020--Hb_001571_050 Hb_007380_060 Hb_007380_060 Hb_011674_020--Hb_007380_060 Hb_011674_020--Hb_000111_320 Hb_001876_050 Hb_001876_050 Hb_011674_020--Hb_001876_050 Hb_001999_310 Hb_001999_310 Hb_011674_020--Hb_001999_310 Hb_000110_190--Hb_000872_010 Hb_000110_190--Hb_002968_080 Hb_001862_140 Hb_001862_140 Hb_000110_190--Hb_001862_140 Hb_000592_030 Hb_000592_030 Hb_000110_190--Hb_000592_030 Hb_002391_290 Hb_002391_290 Hb_000110_190--Hb_002391_290 Hb_000110_190--Hb_056691_060 Hb_000200_120 Hb_000200_120 Hb_000001_190--Hb_000200_120 Hb_002217_030 Hb_002217_030 Hb_000001_190--Hb_002217_030 Hb_000692_160 Hb_000692_160 Hb_000001_190--Hb_000692_160 Hb_003464_080 Hb_003464_080 Hb_000001_190--Hb_003464_080 Hb_000302_310 Hb_000302_310 Hb_000001_190--Hb_000302_310 Hb_099878_030 Hb_099878_030 Hb_000001_190--Hb_099878_030 Hb_000981_030 Hb_000981_030 Hb_179306_020--Hb_000981_030 Hb_179306_020--Hb_002968_080 Hb_005663_110 Hb_005663_110 Hb_179306_020--Hb_005663_110 Hb_003055_040 Hb_003055_040 Hb_179306_020--Hb_003055_040 Hb_179306_020--Hb_011674_020 Hb_039946_050 Hb_039946_050 Hb_179306_020--Hb_039946_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.19417 2.81551 2.4901 5.99092 4.97405 7.76705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.8202 2.659 2.73718 11.5482 5.49602

CAGE analysis