Hb_004800_200

Information

Type -
Description -
Location Contig4800: 158464-159930
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44703: 158608-160760 , PASA_asmbl_44704: 158613-160639 , PASA_asmbl_44705: 158616-160760 , PASA_asmbl_44706: 158617-159313
cDNA
(Sanger)
(ID:Location)		 003_G19.ab1: 158616-159564 , 008_I17.ab1: 158616-159501 , 011_J18.ab1: 158613-159596 , 022_P02.ab1: 158617-159313 , 023_E11.ab1: 158615-159332 , 024_L03.ab1: 158613-159476 , 027_D11.ab1: 159224-160639 , 032_A24.ab1: 158613-159498 , 042_K16.ab1: 158616-159597

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_200 0.0 - - -
2 Hb_000110_190 0.0938775121 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
3 Hb_056691_060 0.097161793 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
4 Hb_000872_010 0.0988340673 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
5 Hb_004143_160 0.1008398923 - - SAB, putative [Ricinus communis]
6 Hb_002025_330 0.1012884289 - - peptide transporter, putative [Ricinus communis]
7 Hb_002968_080 0.101383113 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
8 Hb_000721_040 0.1023577477 - - PREDICTED: uncharacterized protein LOC105636110 isoform X1 [Jatropha curcas]
9 Hb_025193_040 0.1030873413 - - PREDICTED: uncharacterized protein LOC105647286 [Jatropha curcas]
10 Hb_004048_120 0.1048215897 - - PREDICTED: nuclear pore complex protein NUP160 isoform X3 [Jatropha curcas]
11 Hb_000106_120 0.1054727298 - - hypothetical protein glysoja_007050 [Glycine soja]
12 Hb_179306_020 0.1070688684 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
13 Hb_055062_040 0.1072937133 - - ceramidase, putative [Ricinus communis]
14 Hb_007558_100 0.1075322164 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
15 Hb_001440_030 0.1086056826 - - PREDICTED: exocyst complex component SEC8 [Jatropha curcas]
16 Hb_003747_020 0.1087979801 - - PREDICTED: acetyl-coenzyme A synthetase, chloroplastic/glyoxysomal isoform X1 [Jatropha curcas]
17 Hb_000053_040 0.1089927598 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
18 Hb_000575_100 0.1099526401 - - PREDICTED: nephrocystin-3 isoform X2 [Jatropha curcas]
19 Hb_002686_310 0.1113799148 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
20 Hb_011674_020 0.1115992183 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]

Gene co-expression network

sample Hb_004800_200 Hb_004800_200 Hb_000110_190 Hb_000110_190 Hb_004800_200--Hb_000110_190 Hb_056691_060 Hb_056691_060 Hb_004800_200--Hb_056691_060 Hb_000872_010 Hb_000872_010 Hb_004800_200--Hb_000872_010 Hb_004143_160 Hb_004143_160 Hb_004800_200--Hb_004143_160 Hb_002025_330 Hb_002025_330 Hb_004800_200--Hb_002025_330 Hb_002968_080 Hb_002968_080 Hb_004800_200--Hb_002968_080 Hb_000110_190--Hb_000872_010 Hb_000110_190--Hb_002968_080 Hb_001862_140 Hb_001862_140 Hb_000110_190--Hb_001862_140 Hb_000592_030 Hb_000592_030 Hb_000110_190--Hb_000592_030 Hb_002391_290 Hb_002391_290 Hb_000110_190--Hb_002391_290 Hb_000110_190--Hb_056691_060 Hb_012760_100 Hb_012760_100 Hb_056691_060--Hb_012760_100 Hb_000053_040 Hb_000053_040 Hb_056691_060--Hb_000053_040 Hb_001449_040 Hb_001449_040 Hb_056691_060--Hb_001449_040 Hb_003734_010 Hb_003734_010 Hb_056691_060--Hb_003734_010 Hb_056691_060--Hb_000872_010 Hb_000830_030 Hb_000830_030 Hb_056691_060--Hb_000830_030 Hb_001440_030 Hb_001440_030 Hb_000872_010--Hb_001440_030 Hb_000872_010--Hb_000592_030 Hb_000872_010--Hb_000053_040 Hb_001876_010 Hb_001876_010 Hb_000872_010--Hb_001876_010 Hb_004048_120 Hb_004048_120 Hb_004143_160--Hb_004048_120 Hb_000358_050 Hb_000358_050 Hb_004143_160--Hb_000358_050 Hb_007994_010 Hb_007994_010 Hb_004143_160--Hb_007994_010 Hb_004143_160--Hb_002025_330 Hb_135572_010 Hb_135572_010 Hb_004143_160--Hb_135572_010 Hb_002639_080 Hb_002639_080 Hb_004143_160--Hb_002639_080 Hb_003280_020 Hb_003280_020 Hb_002025_330--Hb_003280_020 Hb_002025_330--Hb_004048_120 Hb_000922_030 Hb_000922_030 Hb_002025_330--Hb_000922_030 Hb_002025_330--Hb_000358_050 Hb_055062_040 Hb_055062_040 Hb_002025_330--Hb_055062_040 Hb_004668_090 Hb_004668_090 Hb_002968_080--Hb_004668_090 Hb_012733_070 Hb_012733_070 Hb_002968_080--Hb_012733_070 Hb_179306_020 Hb_179306_020 Hb_002968_080--Hb_179306_020 Hb_000138_100 Hb_000138_100 Hb_002968_080--Hb_000138_100 Hb_013726_090 Hb_013726_090 Hb_002968_080--Hb_013726_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.611 26.3358 23.6549 43.4915 41.0489 56.6092
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.2464 25.2757 22.3265 89.154 60.3468

CAGE analysis